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NM_000478.6(ALPL):c.407G>A (p.Arg136His) AND Infantile hypophosphatasia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 21, 2018
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000169168.10

Allele description [Variation Report for NM_000478.6(ALPL):c.407G>A (p.Arg136His)]

NM_000478.6(ALPL):c.407G>A (p.Arg136His)

Gene:
ALPL:alkaline phosphatase, biomineralization associated [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p36.12
Genomic location:
Preferred name:
NM_000478.6(ALPL):c.407G>A (p.Arg136His)
Other names:
R119H
HGVS:
  • NC_000001.11:g.21563219G>A
  • NG_008940.1:g.58855G>A
  • NM_000478.6:c.407G>AMANE SELECT
  • NM_001127501.4:c.242G>A
  • NM_001177520.3:c.176G>A
  • NM_001369803.2:c.407G>A
  • NM_001369804.2:c.407G>A
  • NM_001369805.2:c.407G>A
  • NP_000469.3:p.Arg136His
  • NP_001120973.2:p.Arg81His
  • NP_001170991.1:p.Arg59His
  • NP_001356732.1:p.Arg136His
  • NP_001356733.1:p.Arg136His
  • NP_001356734.1:p.Arg136His
  • NC_000001.10:g.21889712G>A
  • NM_000478.4:c.407G>A
  • NM_000478.5:c.407G>A
  • P05186:p.Arg136His
  • p.(Arg136His)
Protein change:
R136H; ARG119HIS
Links:
UniProtKB: P05186#VAR_006152; OMIM: 171760.0013; dbSNP: rs121918011
NCBI 1000 Genomes Browser:
rs121918011
Molecular consequence:
  • NM_000478.6:c.407G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127501.4:c.242G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001177520.3:c.176G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369803.2:c.407G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369804.2:c.407G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369805.2:c.407G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Infantile hypophosphatasia
Identifiers:
MedGen: C0268412; Orphanet: 436; OMIM: 241500

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000220398Counsyl
no assertion criteria provided
Pathogenic
(Dec 21, 2018)
unknownclinical testing

PubMed (11)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

[Infantile hypophosphatasia caused by a novel compound heterozygous mutation: a case report and pedigree analysis].

Li DF, Lan D, Zhong JZ, Dewan RK, Xie YS, Yang Y.

Zhongguo Dang Dai Er Ke Za Zhi. 2017 May;19(5):539-544. Chinese.

PubMed [citation]
PMID:
28506345
PMCID:
PMC7389124

Characterization of 11 novel mutations in the tissue non-specific alkaline phosphatase gene responsible for hypophosphatasia and genotype-phenotype correlations.

Brun-Heath I, Taillandier A, Serre JL, Mornet E.

Mol Genet Metab. 2005 Mar;84(3):273-7. Epub 2004 Dec 19.

PubMed [citation]
PMID:
15694177
See all PubMed Citations (11)

Details of each submission

From Counsyl, SCV000220398.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (11)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024