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NM_000546.6(TP53):c.701A>G (p.Tyr234Cys) AND not provided

Germline classification:
Pathogenic/Likely pathogenic (2 submissions)
Last evaluated:
May 11, 2019
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000115732.10

Allele description [Variation Report for NM_000546.6(TP53):c.701A>G (p.Tyr234Cys)]

NM_000546.6(TP53):c.701A>G (p.Tyr234Cys)

Gene:
TP53:tumor protein p53 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.1
Genomic location:
Preferred name:
NM_000546.6(TP53):c.701A>G (p.Tyr234Cys)
Other names:
p.Y234C:TAC>TGC
HGVS:
  • NC_000017.11:g.7674262T>C
  • NG_017013.2:g.18289A>G
  • NM_000546.6:c.701A>GMANE SELECT
  • NM_001126112.3:c.701A>G
  • NM_001126113.3:c.701A>G
  • NM_001126114.3:c.701A>G
  • NM_001126115.2:c.305A>G
  • NM_001126116.2:c.305A>G
  • NM_001126117.2:c.305A>G
  • NM_001126118.2:c.584A>G
  • NM_001276695.3:c.584A>G
  • NM_001276696.3:c.584A>G
  • NM_001276697.3:c.224A>G
  • NM_001276698.3:c.224A>G
  • NM_001276699.3:c.224A>G
  • NM_001276760.3:c.584A>G
  • NM_001276761.3:c.584A>G
  • NP_000537.3:p.Tyr234Cys
  • NP_000537.3:p.Tyr234Cys
  • NP_001119584.1:p.Tyr234Cys
  • NP_001119585.1:p.Tyr234Cys
  • NP_001119586.1:p.Tyr234Cys
  • NP_001119587.1:p.Tyr102Cys
  • NP_001119588.1:p.Tyr102Cys
  • NP_001119589.1:p.Tyr102Cys
  • NP_001119590.1:p.Tyr195Cys
  • NP_001263624.1:p.Tyr195Cys
  • NP_001263625.1:p.Tyr195Cys
  • NP_001263626.1:p.Tyr75Cys
  • NP_001263627.1:p.Tyr75Cys
  • NP_001263628.1:p.Tyr75Cys
  • NP_001263689.1:p.Tyr195Cys
  • NP_001263690.1:p.Tyr195Cys
  • LRG_321t1:c.701A>G
  • LRG_321:g.18289A>G
  • LRG_321p1:p.Tyr234Cys
  • NC_000017.10:g.7577580T>C
  • NM_000546.4:c.701A>G
  • NM_000546.5:c.701A>G
  • P04637:p.Tyr234Cys
Protein change:
Y102C
Links:
UniProtKB: P04637#VAR_005963; dbSNP: rs587780073
NCBI 1000 Genomes Browser:
rs587780073
Molecular consequence:
  • NM_000546.6:c.701A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126112.3:c.701A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126113.3:c.701A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126114.3:c.701A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126115.2:c.305A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126116.2:c.305A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126117.2:c.305A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126118.2:c.584A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276695.3:c.584A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276696.3:c.584A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276697.3:c.224A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276698.3:c.224A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276699.3:c.224A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276760.3:c.584A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276761.3:c.584A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000149641GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Pathogenic
(Mar 10, 2014)
germlineclinical testing

Citation Link,

SCV002020263Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(May 11, 2019)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From GeneDx, SCV000149641.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is denoted TP53 c.701A>G at the cDNA level and p.Tyr234Cys (Y234C) at the protein level, and results in the change of a Tyrosine to a Cysteine (TAC>TGC) in exon 7. This TP53 Tyr234Cys has previously been identified in over 100 tumors as a somatic mutation, most frequently in tumors of the lung, ovaries, brain, breast, and bladder (Petitjean 2007). In addition, this mutation has been observed as a germline mutation in at least one patient with Li Fraumeni syndrome (Pepper 2003). Functional studies have shown loss of transcriptional activation, loss of growth arrest, and loss of induction of apoptosis for this mutation as compared to wild type (Smith 1999, Monti 2007, Monti 2011). Smith et al. (1999) identified that this mutation failed to suppress oncogenic transformation and instead acts as a gain of function mutation, enhancing oncogenic transformation. This variant was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Variant Server, suggesting it is not a common benign variant in these populations. This variant is a non-conservative amino acid, altering a position that is well conserved throughout evolution, and is located in the DNA domain which interacts with HIPK1, ZNF385A, FOXO42, and AXIN1 (UniProt). Multiple in silico algorithms predict that this variant may be damaging to protein structure and function. We therefore consider this mutation to be pathogenic. This variant has been seen apparently mosaic. The variant is found in ENDOM-HEREDIC panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Revvity Omics, Revvity, SCV002020263.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024