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NM_173086.5(KRT6C):c.1414G>A (p.Glu472Lys) AND Palmoplantar keratoderma, nonepidermolytic, focal or diffuse

Germline classification:
Likely pathogenic (2 submissions)
Last evaluated:
Oct 29, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000114418.5

Allele description [Variation Report for NM_173086.5(KRT6C):c.1414G>A (p.Glu472Lys)]

NM_173086.5(KRT6C):c.1414G>A (p.Glu472Lys)

Gene:
KRT6C:keratin 6C [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q13.13
Genomic location:
Preferred name:
NM_173086.5(KRT6C):c.1414G>A (p.Glu472Lys)
HGVS:
  • NC_000012.12:g.52469680C>T
  • NG_012416.1:g.9106G>A
  • NM_173086.5:c.1414G>AMANE SELECT
  • NP_775109.2:p.Glu472Lys
  • NC_000012.11:g.52863464C>T
  • NM_173086.4:c.1414G>A
  • P48668:p.Glu472Lys
Protein change:
E472K; GLU472LYS
Links:
UniProtKB: P48668#VAR_071309; OMIM: 612315.0003; dbSNP: rs587777292
NCBI 1000 Genomes Browser:
rs587777292
Molecular consequence:
  • NM_173086.5:c.1414G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Palmoplantar keratoderma, nonepidermolytic, focal or diffuse (PPKNEFD)
Synonyms:
PALMOPLANTAR KERATODERMA, FOCAL OR DIFFUSE
Identifiers:
MONDO: MONDO:0014327; MedGen: C3810394; Orphanet: 402003; OMIM: 615735

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000148350OMIM
no assertion criteria provided
Pathogenic
(Jul 1, 2013)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

SCV002811562Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Oct 29, 2021)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Keratin K6c mutations cause focal palmoplantar keratoderma.

Wilson NJ, Messenger AG, Leachman SA, O'Toole EA, Lane EB, McLean WH, Smith FJ.

J Invest Dermatol. 2010 Feb;130(2):425-9. doi: 10.1038/jid.2009.215. Epub 2009 Jul 16.

PubMed [citation]
PMID:
19609311

Collapse of the keratin filament network through the expression of mutant keratin 6c observed in a case of focal plantar keratoderma.

Kubo A, Oura Y, Hirano T, Aoyama Y, Sato S, Nakamura K, Takae Y, Amagai M.

J Dermatol. 2013 Jul;40(7):553-7. doi: 10.1111/1346-8138.12185. Epub 2013 May 10.

PubMed [citation]
PMID:
23662636
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000148350.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In 3 affected members of a Japanese family with focal or diffuse palmoplantar keratoderma (PPKNEFD; 615735), Wilson et al. (2010) identified heterozygosity for a c.1414G-A transition in exon 7 of the KRT6C gene, resulting in a glu472-to-lys (E472K) substitution at a conserved residue in the C terminus of the 2B domain. The mutation, which segregated with disease in the family, was not found in 104 controls.

In a father and daughter with focal plantar keratoderma, Kubo et al. (2013) sequenced the candidate gene KRT6C and identified heterozygosity for the E472K mutation, which was not present in an unaffected son. Palmar skin as well as the nails of hands and feet were normal in the affected individuals. Analysis of transfected HaCaT cells showed that cells expressing low levels of mutant protein exhibited no alterations in the keratin filament network, whereas cells expressing high levels displayed a collapsed network of keratin filaments. Semiquantification of exogenously expressed KRT6C confirmed that the collapse of the keratin filament network occurred in a manner dependent on the level of expression of mutant keratin-6c.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Fulgent Genetics, Fulgent Genetics, SCV002811562.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024