U.S. flag

An official website of the United States government

NM_000368.5(TSC1):c.1001C>T (p.Ser334Leu) AND Tuberous sclerosis syndrome

Germline classification:
Benign (2 submissions)
Last evaluated:
Feb 5, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000054847.7

Allele description [Variation Report for NM_000368.5(TSC1):c.1001C>T (p.Ser334Leu)]

NM_000368.5(TSC1):c.1001C>T (p.Ser334Leu)

Gene:
TSC1:TSC complex subunit 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.13
Genomic location:
Preferred name:
NM_000368.5(TSC1):c.1001C>T (p.Ser334Leu)
HGVS:
  • NC_000009.12:g.132911481G>A
  • NG_012386.1:g.38153C>T
  • NM_000368.5:c.1001C>TMANE SELECT
  • NM_001162426.2:c.1001C>T
  • NM_001162427.2:c.848C>T
  • NM_001362177.2:c.638C>T
  • NP_000359.1:p.Ser334Leu
  • NP_000359.1:p.Ser334Leu
  • NP_001155898.1:p.Ser334Leu
  • NP_001155899.1:p.Ser283Leu
  • NP_001349106.1:p.Ser213Leu
  • LRG_486t1:c.1001C>T
  • LRG_486:g.38153C>T
  • LRG_486p1:p.Ser334Leu
  • NC_000009.11:g.135786868G>A
  • NM_000368.3:c.1001C>T
  • NM_000368.4:c.1001C>T
  • p.(Ser334Leu)
Protein change:
S213L
Links:
Tuberous sclerosis database (TSC1): TSC1_00279; dbSNP: rs118203481
NCBI 1000 Genomes Browser:
rs118203481
Molecular consequence:
  • NM_000368.5:c.1001C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001162426.2:c.1001C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001162427.2:c.848C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001362177.2:c.638C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
41

Condition(s)

Name:
Tuberous sclerosis syndrome (TSC)
Synonyms:
Tuberous sclerosis
Identifiers:
MONDO: MONDO:0001734; MedGen: C0041341; OMIM: PS191100

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000065752Tuberous sclerosis database (TSC1)
no classification provided

(Tuberous Sclerosis Database Assertion Criteria 2015)
not providedgermlinecuration

PubMed (2)
[See all records that cite these PMIDs]

Citation Link,

SCV004840501All of Us Research Program, National Institutes of Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benign
(Feb 5, 2024)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes3not providednot providednot providednot providedcuration
not providedgermlineunknown41not providednot provided108544not providedclinical testing

Citations

PubMed

Identification of a region required for TSC1 stability by functional analysis of TSC1 missense mutations found in individuals with tuberous sclerosis complex.

Mozaffari M, Hoogeveen-Westerveld M, Kwiatkowski D, Sampson J, Ekong R, Povey S, den Dunnen JT, van den Ouweland A, Halley D, Nellist M.

BMC Med Genet. 2009 Sep 11;10:88. doi: 10.1186/1471-2350-10-88.

PubMed [citation]
PMID:
19747374
PMCID:
PMC2753308

Functional assessment of variants in the TSC1 and TSC2 genes identified in individuals with Tuberous Sclerosis Complex.

Hoogeveen-Westerveld M, Wentink M, van den Heuvel D, Mozaffari M, Ekong R, Povey S, den Dunnen JT, Metcalfe K, Vallee S, Krueger S, Bergoffen J, Shashi V, Elmslie F, Kwiatkowski D, Sampson J, Vidales C, Dzarir J, Garcia-Planells J, Dies K, Maat-Kievit A, van den Ouweland A, Halley D, et al.

Hum Mutat. 2011 Apr;32(4):424-35. doi: 10.1002/humu.21451. Epub 2011 Mar 8.

PubMed [citation]
PMID:
21309039
See all PubMed Citations (3)

Details of each submission

From Tuberous sclerosis database (TSC1), SCV000065752.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcuration PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From All of Us Research Program, National Institutes of Health, SCV004840501.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided41not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown108544not providednot provided41not providednot providednot provided

Last Updated: Oct 20, 2024