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GRCh37/hg19 17q23-24(chr17:59209629-64222315)x3 AND See cases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 12, 2011
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000052485.5

Allele description [Variation Report for GRCh37/hg19 17q23-24(chr17:59209629-64222315)x3]

GRCh37/hg19 17q23-24(chr17:59209629-64222315)x3

Genes:
  • BCAS3:BCAS3 microtubule associated cell migration factor [Gene - OMIM - HGNC]
  • BRIP1:BRCA1 interacting helicase 1 [Gene - OMIM - HGNC]
  • CD79B:CD79b molecule [Gene - OMIM - HGNC]
  • DCAF7:DDB1 and CUL4 associated factor 7 [Gene - OMIM - HGNC]
  • DDX42:DEAD-box helicase 42 [Gene - OMIM - HGNC]
  • DDX5:DEAD-box helicase 5 [Gene - OMIM - HGNC]
  • POLG2:DNA polymerase gamma 2, accessory subunit [Gene - OMIM - HGNC]
  • EFCAB3:EF-hand calcium binding domain 3 [Gene - OMIM - HGNC]
  • FTSJ3:FtsJ RNA 2'-O-methyltransferase 3 [Gene - OMIM - HGNC]
  • GNA13:G protein subunit alpha 13 [Gene - OMIM - HGNC]
  • LIMD2:LIM domain containing 2 [Gene - HGNC]
  • SMURF2:SMAD specific E3 ubiquitin protein ligase 2 [Gene - OMIM - HGNC]
  • STRADA:STE20 related adaptor alpha [Gene - OMIM - HGNC]
  • SMARCD2:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Gene - OMIM - HGNC]
  • TBX2:T-box transcription factor 2 [Gene - OMIM - HGNC]
  • TBX4:T-box transcription factor 4 [Gene - OMIM - HGNC]
  • ACE:angiotensin I converting enzyme [Gene - OMIM - HGNC]
  • APOH:apolipoprotein H [Gene - OMIM - HGNC]
  • AXIN2:axin 2 [Gene - OMIM - HGNC]
  • CEP112:centrosomal protein 112 [Gene - OMIM - HGNC]
  • CEP95:centrosomal protein 95 [Gene - HGNC]
  • CSH1:chorionic somatomammotropin hormone 1 [Gene - OMIM - HGNC]
  • CSH2:chorionic somatomammotropin hormone 2 [Gene - OMIM - HGNC]
  • CSHL1:chorionic somatomammotropin hormone like 1 [Gene - OMIM - HGNC]
  • CCDC47:coiled-coil domain containing 47 [Gene - OMIM - HGNC]
  • CYB561:cytochrome b561 [Gene - OMIM - HGNC]
  • ERN1:endoplasmic reticulum to nucleus signaling 1 [Gene - OMIM - HGNC]
  • GH1:growth hormone 1 [Gene - OMIM - HGNC]
  • GH2:growth hormone 2 [Gene - OMIM - HGNC]
  • INTS2:integrator complex subunit 2 [Gene - OMIM - HGNC]
  • ICAM2:intercellular adhesion molecule 2 [Gene - OMIM - HGNC]
  • LRRC37A3:leucine rich repeat containing 37 member A3 [Gene - OMIM - HGNC]
  • LINC02875:long intergenic non-protein coding RNA 2875 [Gene - HGNC]
  • MRC2:mannose receptor C-type 2 [Gene - OMIM - HGNC]
  • MILR1:mast cell immunoglobulin like receptor 1 [Gene - HGNC]
  • MED13:mediator complex subunit 13 [Gene - OMIM - HGNC]
  • MARCHF10:membrane associated ring-CH-type finger 10 [Gene - OMIM - HGNC]
  • METTL2A:methyltransferase 2A, tRNA N3-cytidine [Gene - OMIM - HGNC]
  • MAP3K3:mitogen-activated protein kinase kinase kinase 3 [Gene - OMIM - HGNC]
  • NACA2:nascent polypeptide associated complex subunit alpha 2 [Gene - OMIM - HGNC]
  • PECAM1:platelet and endothelial cell adhesion molecule 1 [Gene - OMIM - HGNC]
  • KCNH6:potassium voltage-gated channel subfamily H member 6 [Gene - OMIM - HGNC]
  • PRR29:proline rich 29 [Gene - HGNC]
  • PSMC5:proteasome 26S subunit, ATPase 5 [Gene - OMIM - HGNC]
  • RGS9:regulator of G protein signaling 9 [Gene - OMIM - HGNC]
  • SCN4A:sodium voltage-gated channel alpha subunit 4 [Gene - OMIM - HGNC]
  • TEX2:testis expressed 2 [Gene - OMIM - HGNC]
  • TANC2:tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Gene - OMIM - HGNC]
  • TLK2:tousled like kinase 2 [Gene - OMIM - HGNC]
  • TACO1:translational activator of cytochrome c oxidase I [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
17q23-24
Genomic location:
Preferred name:
GRCh37/hg19 17q23-24(chr17:59209629-64222315)x3
HGVS:
  • NC_000017.10:g.(?_59209629)_(64222315_?)dup
  • NC_000017.9:g.(?_56564411)_(61652777_?)dup
Links:
dbVar: nssv578746; dbVar: nsv531191
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000079839ISCA site 17

See additional submitters

criteria provided, single submitter

(Kaminsky et al. (Genet Med. 2011))
Pathogenic
(Aug 12, 2011)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providedyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabilities.

Kaminsky EB, Kaul V, Paschall J, Church DM, Bunke B, Kunig D, Moreno-De-Luca D, Moreno-De-Luca A, Mulle JG, Warren ST, Richard G, Compton JG, Fuller AE, Gliem TJ, Huang S, Collinson MN, Beal SJ, Ackley T, Pickering DL, Golden DM, Aston E, Whitby H, et al.

Genet Med. 2011 Sep;13(9):777-84. doi: 10.1097/GIM.0b013e31822c79f9.

PubMed [citation]
PMID:
21844811
PMCID:
PMC3661946

Details of each submission

From ISCA site 17, SCV000079839.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: May 7, 2024