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NM_000503.6(EYA1):c.1278C>T (p.Gly426=) AND not specified

Germline classification:
Benign (5 submissions)
Last evaluated:
Nov 24, 2010
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000041387.15

Allele description [Variation Report for NM_000503.6(EYA1):c.1278C>T (p.Gly426=)]

NM_000503.6(EYA1):c.1278C>T (p.Gly426=)

Gene:
EYA1:EYA transcriptional coactivator and phosphatase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q13.3
Genomic location:
Preferred name:
NM_000503.6(EYA1):c.1278C>T (p.Gly426=)
HGVS:
  • NC_000008.11:g.71216774G>A
  • NG_011735.3:g.336357C>T
  • NM_000503.6:c.1278C>TMANE SELECT
  • NM_001288574.2:c.1260C>T
  • NM_001288575.2:c.912C>T
  • NM_001370333.1:c.1365C>T
  • NM_001370334.1:c.1278C>T
  • NM_001370335.1:c.1278C>T
  • NM_001370336.1:c.1257C>T
  • NM_172058.4:c.1278C>T
  • NM_172059.5:c.1260C>T
  • NP_000494.2:p.Gly426=
  • NP_001275503.1:p.Gly420=
  • NP_001275504.1:p.Gly304=
  • NP_001357262.1:p.Gly455=
  • NP_001357263.1:p.Gly426=
  • NP_001357264.1:p.Gly426=
  • NP_001357265.1:p.Gly419=
  • NP_742055.1:p.Gly426=
  • NP_742056.2:p.Gly420=
  • NC_000008.10:g.72129009G>A
  • NG_011735.2:g.150459C>T
  • NM_000503.4:c.1278C>T
  • NM_172058.2:c.1278C>T
  • NM_172058.3:c.1278C>T
  • c.1278C>T
  • p.Gly426Gly
Links:
dbSNP: rs4738118
NCBI 1000 Genomes Browser:
rs4738118
Molecular consequence:
  • NM_000503.6:c.1278C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001288574.2:c.1260C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001288575.2:c.912C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001370333.1:c.1365C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001370334.1:c.1278C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001370335.1:c.1278C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001370336.1:c.1257C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_172058.4:c.1278C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_172059.5:c.1260C>T - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
533

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000065080Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Benign
(Nov 24, 2010)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000316420PreventionGenetics, part of Exact Sciences
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benigngermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001743143Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus
no assertion criteria provided
Benigngermlineclinical testing

SCV001955662Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Benigngermlineclinical testing

SCV001964017Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlinenot provided543533not providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000065080.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided543not providednot providedclinical testing PubMed (1)

Description

The Gly426Gly variant in EYA1 is a silent common benign variant present in ~10% of Caucasian and African populations, and in >50% of Asian populations (dbSNP- r s4738118).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided543not provided533not provided

From PreventionGenetics, part of Exact Sciences, SCV000316420.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV001743143.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus, SCV001955662.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001964017.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024