NM_022124.6(CDH23):c.8022G>A (p.Gln2674=) AND not specified

Germline classification:: Benign/Likely benign (3 submissions)
Last evaluated:: Oct 20, 2015
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000039279.11

Allele description [Variation Report for NM_022124.6(CDH23):c.8022G>A (p.Gln2674=)]

NM_022124.6(CDH23):c.8022G>A (p.Gln2674=)

Genes:

LOC111982869:Sharpr-MPRA regulatory region 2121 [Gene]
CDH23:cadherin related 23 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

10q22.1

Genomic location:

Preferred name:

NM_022124.6(CDH23):c.8022G>A (p.Gln2674=)

Other names:

p.Q2674Q:CAG>CAA

HGVS:

NC_000010.11:g.71805955G>A
NG_008835.1:g.414009G>A
NG_056362.1:g.224G>A
NM_001171933.1:c.1302G>A
NM_001171934.1:c.1302G>A
NM_001171936.1:c.-6337G>A
NM_022124.6:c.8022G>AMANE SELECT
NP_001165404.1:p.Gln434=
NP_001165405.1:p.Gln434=
NP_071407.4:p.Gln2674=
NC_000010.10:g.73565712G>A
NM_022124.5:c.8022G>A
NP_071407.4:p.(=)
c.8022G>A
p.Gln2674Gln

Links:

dbSNP: rs201733315

NCBI 1000 Genomes Browser:

rs201733315

Molecular consequence:

NM_001171936.1:c.-6337G>A - genic upstream transcript variant - [Sequence Ontology: SO:0002153]
NM_001171933.1:c.1302G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001171934.1:c.1302G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_022124.6:c.8022G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Observations:

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000062963	Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine	criteria provided, single submitter (LMM Criteria)	Benign (May 14, 2012)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV000114034	Eurofins Ntd Llc (ga)	criteria provided, single submitter (EGL Classification Definitions 2015)	Likely benign (Oct 20, 2015)	germline	clinical testing	Citation Link,
SCV000167625	GeneDx	criteria provided, single submitter (GeneDx Variant Classification (06012015))	Benign (Jan 28, 2014)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000062963

Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine

criteria provided, single submitter

(LMM Criteria)

Benign
(May 14, 2012)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000114034

Eurofins Ntd Llc (ga)

criteria provided, single submitter

(EGL Classification Definitions 2015)

Likely benign
(Oct 20, 2015)

germline

clinical testing

Citation Link,

SCV000167625

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification (06012015))

Benign
(Jan 28, 2014)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	not provided	25	25	not provided	not provided	not provided	clinical testing
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	3	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]

PMID:: 24033266
PMCID:: PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000062963.5

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	25	not provided	not provided	clinical testing	PubMed (1)

Description

Gln2674Gln in Exon 56 of CDH23: This variant is not expected to have clinical si gnificance because it does not alter an amino acid residue, is not located withi n the splice consensus sequence, and has been identified in 0.7% (50/6690) of Eu ropean American chromosomes from a broad population by the NHLBI Exome Sequencin g Project (http://evs.gs.washington.edu/EVS).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	not provided	not provided	not provided	not provided		25	not provided	25	not provided

From Eurofins Ntd Llc (ga), SCV000114034.8

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	3	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		3	not provided	not provided	not provided

From GeneDx, SCV000167625.10

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 24, 2024

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