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NC_000011.10:g.47337730dup AND Hypertrophic cardiomyopathy 4

Germline classification:
Pathogenic (10 submissions)
Last evaluated:
Nov 1, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000035487.19

Allele description [Variation Report for NC_000011.10:g.47337730dup]

NC_000011.10:g.47337730dup

Gene:
MYBPC3:myosin binding protein C3 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
11p11.2
Genomic location:
Preferred name:
NC_000011.10:g.47337730dup
Other names:
p.Trp792ValfsX41; p.Trp792Valfs*41
HGVS:
  • NC_000011.10:g.47337730dup
  • NG_007667.1:g.19973dup
  • NM_000256.3:c.2373dupMANE SELECT
  • NM_000256.3:c.2373dupG
  • NP_000247.2:p.Trp792fs
  • LRG_386t1:c.2373dup
  • LRG_386:g.19973dup
  • LRG_386p1:p.Trp792fs
  • NC_000011.10:g.47337729_47337730insC
  • NC_000011.9:g.47359281dup
  • NM_000256.3:c.2372_2373insGMANE SELECT
  • NM_000256.3:c.2373dupGMANE SELECT
  • c.2373_2374insG
  • p.W792VfsX41
Protein change:
W792fs
Links:
OMIM: 600958.0011; dbSNP: rs397515963
NCBI 1000 Genomes Browser:
rs397515963

Condition(s)

Name:
Hypertrophic cardiomyopathy 4
Synonyms:
Familial hypertrophic cardiomyopathy 4
Identifiers:
MONDO: MONDO:0007268; MedGen: C1861862; OMIM: 115197

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000029361OMIM
no assertion criteria provided
Pathogenic
(Mar 28, 2000)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Moolman, J. A., Reith, S., Uhl, K., Bailey, S., Gautel, M., Jeschke, B., Fischer, C., Ochs, J., McKenna, W. J., Klues, H., Vosberg, H.-P. A newly created splice donor site in exon 25 of the MyBP-C gene is responsible for inherited hypertrophic cardiomyopathy with incomplete disease penetrance. Circulation 101: 1396-1402, 2000.,

SCV000299248Center for Medical Genetics Ghent, University of Ghent
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jan 1, 2016)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

SCV000733041Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus
no assertion criteria provided
Pathogenicgermlineclinical testing

SCV000743554Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus
criteria provided, single submitter

(ACGS Guidelines, 2013)
Pathogenic
(Jan 25, 2017)
germlineclinical testing

Citation Link,

SCV000744840Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus
criteria provided, single submitter

(ACGS Guidelines, 2013)
Pathogenic
(Sep 21, 2015)
germlineclinical testing

Citation Link,

SCV001367637Centre for Mendelian Genomics, University Medical Centre Ljubljana
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Oct 31, 2018)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001984985Clinical Genetics Laboratory, Region Ostergotland
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jun 9, 2020)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002765041Institute of Human Genetics, University of Leipzig Medical Center
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Dec 16, 2022)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV004244678Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Nov 1, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV005398155Victorian Clinical Genetics Services, Murdoch Childrens Research Institute

See additional submitters

criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Feb 2, 2022)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Mutations in the gene for cardiac myosin-binding protein C and late-onset familial hypertrophic cardiomyopathy.

Niimura H, Bachinski LL, Sangwatanaroj S, Watkins H, Chudley AE, McKenna W, Kristinsson A, Roberts R, Sole M, Maron BJ, Seidman JG, Seidman CE.

N Engl J Med. 1998 Apr 30;338(18):1248-57.

PubMed [citation]
PMID:
9562578

Cardiac myosin-binding protein C mutations and hypertrophic cardiomyopathy: haploinsufficiency, deranged phosphorylation, and cardiomyocyte dysfunction.

van Dijk SJ, Dooijes D, dos Remedios C, Michels M, Lamers JM, Winegrad S, Schlossarek S, Carrier L, ten Cate FJ, Stienen GJ, van der Velden J.

Circulation. 2009 Mar 24;119(11):1473-83. doi: 10.1161/CIRCULATIONAHA.108.838672. Epub 2009 Mar 9.

PubMed [citation]
PMID:
19273718
See all PubMed Citations (7)

Details of each submission

From OMIM, SCV000029361.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 115 members of 3 families with hypertrophic cardiomyopathy (CMH4; 115197), Niimura et al. (1998) identified a 1-bp insertion in codon 791 (791insG, or 2405insG) in exon 25 of the MYBPC3 gene. Of mutation-positive individuals who underwent examination, only 1 of 19 less than 20 years of age had cardiac hypertrophy, whereas 44 of 72 mutation-positive individuals 20 years old or older had cardiac hypertrophy.

Moolman et al. (2000) reported a large family segregating CMH4 caused by a single base insertion (G) in exon 25 of the MYBPC3 gene. This created a 5-prime splice donor site (AGGTGGG). Moolman et al. (2000) demonstrated that this mutation resulted in the loss of 40 basepairs at the 3-prime end of exon 25 in mRNA extracted from affected myocardium. This in turn led to a premature translation stop and a truncated protein in which the C-terminal binding sites for myosin heavy chain and titin were lost. This study also examined the phenotypic consequences of this mutation in 27 carriers within the same family. Overall, only 15 (56%) showed features of hypertrophic cardiomyopathy. Age of onset of symptoms varied from 29 to 68, with most individuals developing their first symptoms from the fourth decade onwards. The Kaplan-Meier survival curve for this group was similar to that of carriers of the asp175-to-asn tropomyosin-1 mutation (191010.0002) and significantly better than that of carriers of cardiac troponin T2 (191045) or cardiac beta-myosin heavy chain (160760) mutations. Twelve mutation carriers were entirely asymptomatic and had no changes on echocardiography or ECG at the time of the study. This mutation was therefore considered to have considerably reduced penetrance and delayed onset.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Center for Medical Genetics Ghent, University of Ghent, SCV000299248.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)

Description

This variant has not been identified in large population databases (Gnomad, 1000 Genomes, Go NL, Exome Variant Server) and is predicted to cause loss of normal protein function either through protein truncation or nonsense-mediated mRNA decay. In addition, the variant has been reported previously in individuals with cardiomyopathy. Functional studies demonstrate that this variant causes abberrant phosphorylation of contractile proteins, reduced maximal force-generating capacity of cardiomyocytes, and enhanced Ca2+ sensitivity (PMID: 19273718 ).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV000733041.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV000743554.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV000744840.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Centre for Mendelian Genomics, University Medical Centre Ljubljana, SCV001367637.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant was classified as: Pathogenic. The following ACMG criteria were applied in classifying this variant: PS1,PVS1,PS3,PP3.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics Laboratory, Region Ostergotland, SCV001984985.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

PVS1, PS4, PP5

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Institute of Human Genetics, University of Leipzig Medical Center, SCV002765041.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

_x000D_reported as incidental finding according to ACMG Criteria applied: PVS1, PS4

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center, SCV004244678.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

PVS1, PS4

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Victorian Clinical Genetics Services, Murdoch Childrens Research Institute, SCV005398155.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (5)

Description

Based on the classification scheme VCGS_Germline_v1.3.4, this variant is classified as Pathogenic. Following criteria are met: 0102 - Loss of function is a known mechanism of disease in this gene and is associated with dilated cardiomyopathy 1MM (MIM#615396), hypertrophic cardiomyopathy 4 (MIM#115197) and left ventricular noncompaction 10 (MIM#615396) (OMIM). (I) 0108 - This gene is associated with both recessive and dominant disease. Heterozygous variants are frequently reported in adult onset conditions, however recessive inheritance results in a more severe early onset phenotype (OMIM). (I) 0201 - Variant is predicted to cause nonsense-mediated decay (NMD) and loss of protein (premature termination codon is located at least 54 nucleotides upstream of the final exon-exon junction). (SP) 0251 - This variant is heterozygous. (I) 0302 - Variant is present in gnomAD (v2) <0.001 for a dominant condition (3 heterozygotes, 0 homozygotes). (SP) 0701 - Other NMD-predicted variants comparable to the one identified in this case have very strong previous evidence for pathogenicity. Many other NMD-predicted variants have previously been classified as pathogenic (ClinVar). (SP) 0801 - Very strong previous evidence of pathogenicity in unrelated individuals. The variant has previously been reported as pathogenic in multiple affected individuals with hypertrophic cardiomyopathy and is considered to be a founder mutation in the Dutch population (PMIDs: 14563344, 32009526, 32841044, ClinVar). (SP) 1002 - This variant has moderate functional evidence supporting abnormal protein function. Mutant constructs expressed in mouse MYBPC3 KO engineered heart tissues displayed significantly different maximal force, contraction and relaxation kinetics, and external Ca2+ sensitivities compared with WT constructs. Moreover, mutant constructs were unable to rescue the MYBPC3 KO phenotype when expressed in either homozygous and heterozygous states (PMID: 27108529). (SP) 1208 - Inheritance information for this variant is not currently available in this individual. (I) Legend: (SP) - Supporting pathogenic, (I) - Information, (SB) - Supporting benign

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024