NC_000011.10:g.47337730dup AND Hypertrophic cardiomyopathy 4
- Germline classification:
- Pathogenic (10 submissions)
- Last evaluated:
- Nov 1, 2023
- Review status:
- 2 stars out of maximum of 4 starscriteria provided, multiple submitters, no conflicts
- Somatic classification
of clinical impact: - None
- Review status:
- (0/4) 0 stars out of maximum of 4 starsno assertion criteria provided
- Somatic classification
of oncogenicity: - None
- Review status:
- (0/4) 0 stars out of maximum of 4 starsno assertion criteria provided
- Record status:
- current
- Accession:
- RCV000035487.19
Allele description [Variation Report for NC_000011.10:g.47337730dup]
NC_000011.10:g.47337730dup
- Gene:
- MYBPC3:myosin binding protein C3 [Gene - OMIM - HGNC]
- Variant type:
- Duplication
- Cytogenetic location:
- 11p11.2
- Genomic location:
- Preferred name:
- NC_000011.10:g.47337730dup
- Other names:
- p.Trp792ValfsX41; p.Trp792Valfs*41
- HGVS:
- NC_000011.10:g.47337730dup
- NG_007667.1:g.19973dup
- NM_000256.3:c.2373dupMANE SELECT
- NM_000256.3:c.2373dupG
- NP_000247.2:p.Trp792fs
- LRG_386t1:c.2373dup
- LRG_386:g.19973dup
- LRG_386p1:p.Trp792fs
- NC_000011.10:g.47337729_47337730insC
- NC_000011.9:g.47359281dup
- NM_000256.3:c.2372_2373insGMANE SELECT
- NM_000256.3:c.2373dupGMANE SELECT
- c.2373_2374insG
- p.W792VfsX41
This HGVS expression did not pass validation- Protein change:
- W792fs
- Links:
- OMIM: 600958.0011; dbSNP: rs397515963
- NCBI 1000 Genomes Browser:
- rs397515963
Condition(s)
Assertion and evidence details
Submission Accession | Submitter | Review Status (Assertion method) | Clinical Significance (Last evaluated) | Origin | Method | Citations |
---|---|---|---|---|---|---|
SCV000029361 | OMIM | no assertion criteria provided | Pathogenic (Mar 28, 2000) | germline | literature only | PubMed (1) Moolman, J. A., Reith, S., Uhl, K., Bailey, S., Gautel, M., Jeschke, B., Fischer, C., Ochs, J., McKenna, W. J., Klues, H., Vosberg, H.-P. A newly created splice donor site in exon 25 of the MyBP-C gene is responsible for inherited hypertrophic cardiomyopathy with incomplete disease penetrance. Circulation 101: 1396-1402, 2000., |
SCV000299248 | Center for Medical Genetics Ghent, University of Ghent | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Jan 1, 2016) | germline | clinical testing | |
SCV000733041 | Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus | no assertion criteria provided | Pathogenic | germline | clinical testing | |
SCV000743554 | Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus | criteria provided, single submitter (ACGS Guidelines, 2013) | Pathogenic (Jan 25, 2017) | germline | clinical testing | |
SCV000744840 | Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus | criteria provided, single submitter (ACGS Guidelines, 2013) | Pathogenic (Sep 21, 2015) | germline | clinical testing | |
SCV001367637 | Centre for Mendelian Genomics, University Medical Centre Ljubljana | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Oct 31, 2018) | unknown | clinical testing | |
SCV001984985 | Clinical Genetics Laboratory, Region Ostergotland | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Jun 9, 2020) | germline | clinical testing | |
SCV002765041 | Institute of Human Genetics, University of Leipzig Medical Center | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Dec 16, 2022) | unknown | clinical testing | |
SCV004244678 | Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Nov 1, 2023) | germline | clinical testing | |
SCV005398155 | Victorian Clinical Genetics Services, Murdoch Childrens Research Institute
| criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Feb 2, 2022) | germline | clinical testing |
Summary from all submissions
Ethnicity | Origin | Affected | Individuals | Families | Chromosomes tested | Number Tested | Family history | Method |
---|---|---|---|---|---|---|---|---|
not provided | germline | yes | not provided | not provided | not provided | not provided | not provided | clinical testing |
not provided | unknown | yes | not provided | not provided | not provided | not provided | not provided | clinical testing |
not provided | unknown | unknown | not provided | not provided | not provided | not provided | not provided | clinical testing |
not provided | germline | not provided | not provided | not provided | not provided | not provided | not provided | literature only |
not provided | germline | unknown | not provided | not provided | not provided | not provided | not provided | clinical testing |
Citations
PubMed
Niimura H, Bachinski LL, Sangwatanaroj S, Watkins H, Chudley AE, McKenna W, Kristinsson A, Roberts R, Sole M, Maron BJ, Seidman JG, Seidman CE.
N Engl J Med. 1998 Apr 30;338(18):1248-57.
- PMID:
- 9562578
van Dijk SJ, Dooijes D, dos Remedios C, Michels M, Lamers JM, Winegrad S, Schlossarek S, Carrier L, ten Cate FJ, Stienen GJ, van der Velden J.
Circulation. 2009 Mar 24;119(11):1473-83. doi: 10.1161/CIRCULATIONAHA.108.838672. Epub 2009 Mar 9.
- PMID:
- 19273718
Details of each submission
From OMIM, SCV000029361.3
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | literature only | PubMed (1) |
Description
In 115 members of 3 families with hypertrophic cardiomyopathy (CMH4; 115197), Niimura et al. (1998) identified a 1-bp insertion in codon 791 (791insG, or 2405insG) in exon 25 of the MYBPC3 gene. Of mutation-positive individuals who underwent examination, only 1 of 19 less than 20 years of age had cardiac hypertrophy, whereas 44 of 72 mutation-positive individuals 20 years old or older had cardiac hypertrophy.
Moolman et al. (2000) reported a large family segregating CMH4 caused by a single base insertion (G) in exon 25 of the MYBPC3 gene. This created a 5-prime splice donor site (AGGTGGG). Moolman et al. (2000) demonstrated that this mutation resulted in the loss of 40 basepairs at the 3-prime end of exon 25 in mRNA extracted from affected myocardium. This in turn led to a premature translation stop and a truncated protein in which the C-terminal binding sites for myosin heavy chain and titin were lost. This study also examined the phenotypic consequences of this mutation in 27 carriers within the same family. Overall, only 15 (56%) showed features of hypertrophic cardiomyopathy. Age of onset of symptoms varied from 29 to 68, with most individuals developing their first symptoms from the fourth decade onwards. The Kaplan-Meier survival curve for this group was similar to that of carriers of the asp175-to-asn tropomyosin-1 mutation (191010.0002) and significantly better than that of carriers of cardiac troponin T2 (191045) or cardiac beta-myosin heavy chain (160760) mutations. Twelve mutation carriers were entirely asymptomatic and had no changes on echocardiography or ECG at the time of the study. This mutation was therefore considered to have considerably reduced penetrance and delayed onset.
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | not provided | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Center for Medical Genetics Ghent, University of Ghent, SCV000299248.2
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (2) |
Description
This variant has not been identified in large population databases (Gnomad, 1000 Genomes, Go NL, Exome Variant Server) and is predicted to cause loss of normal protein function either through protein truncation or nonsense-mediated mRNA decay. In addition, the variant has been reported previously in individuals with cardiomyopathy. Functional studies demonstrate that this variant causes abberrant phosphorylation of contractile proteins, reduced maximal force-generating capacity of cardiomyocytes, and enhanced Ca2+ sensitivity (PMID: 19273718 ).
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV000733041.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | not provided |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV000743554.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | not provided |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV000744840.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | not provided |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Centre for Mendelian Genomics, University Medical Centre Ljubljana, SCV001367637.2
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (1) |
Description
This variant was classified as: Pathogenic. The following ACMG criteria were applied in classifying this variant: PS1,PVS1,PS3,PP3.
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | unknown | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Clinical Genetics Laboratory, Region Ostergotland, SCV001984985.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (1) |
Description
PVS1, PS4, PP5
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Institute of Human Genetics, University of Leipzig Medical Center, SCV002765041.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (1) |
Description
_x000D_reported as incidental finding according to ACMG Criteria applied: PVS1, PS4
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | unknown | unknown | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center, SCV004244678.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (1) |
Description
PVS1, PS4
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | unknown | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Victorian Clinical Genetics Services, Murdoch Childrens Research Institute, SCV005398155.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (5) |
Description
Based on the classification scheme VCGS_Germline_v1.3.4, this variant is classified as Pathogenic. Following criteria are met: 0102 - Loss of function is a known mechanism of disease in this gene and is associated with dilated cardiomyopathy 1MM (MIM#615396), hypertrophic cardiomyopathy 4 (MIM#115197) and left ventricular noncompaction 10 (MIM#615396) (OMIM). (I) 0108 - This gene is associated with both recessive and dominant disease. Heterozygous variants are frequently reported in adult onset conditions, however recessive inheritance results in a more severe early onset phenotype (OMIM). (I) 0201 - Variant is predicted to cause nonsense-mediated decay (NMD) and loss of protein (premature termination codon is located at least 54 nucleotides upstream of the final exon-exon junction). (SP) 0251 - This variant is heterozygous. (I) 0302 - Variant is present in gnomAD (v2) <0.001 for a dominant condition (3 heterozygotes, 0 homozygotes). (SP) 0701 - Other NMD-predicted variants comparable to the one identified in this case have very strong previous evidence for pathogenicity. Many other NMD-predicted variants have previously been classified as pathogenic (ClinVar). (SP) 0801 - Very strong previous evidence of pathogenicity in unrelated individuals. The variant has previously been reported as pathogenic in multiple affected individuals with hypertrophic cardiomyopathy and is considered to be a founder mutation in the Dutch population (PMIDs: 14563344, 32009526, 32841044, ClinVar). (SP) 1002 - This variant has moderate functional evidence supporting abnormal protein function. Mutant constructs expressed in mouse MYBPC3 KO engineered heart tissues displayed significantly different maximal force, contraction and relaxation kinetics, and external Ca2+ sensitivities compared with WT constructs. Moreover, mutant constructs were unable to rescue the MYBPC3 KO phenotype when expressed in either homozygous and heterozygous states (PMID: 27108529). (SP) 1208 - Inheritance information for this variant is not currently available in this individual. (I) Legend: (SP) - Supporting pathogenic, (I) - Information, (SB) - Supporting benign
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | unknown | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
Last Updated: Nov 24, 2024