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NM_000781.3(CYP11A1):c.835del (p.Ile279fs) AND Congenital adrenal insufficiency with 46, XY sex reversal OR 46,XY disorder of sex development-adrenal insufficiency due to CYP11A1 deficiency

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Sep 7, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000019071.29

Allele description [Variation Report for NM_000781.3(CYP11A1):c.835del (p.Ile279fs)]

NM_000781.3(CYP11A1):c.835del (p.Ile279fs)

Gene:
CYP11A1:cytochrome P450 family 11 subfamily A member 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
15q24.1
Genomic location:
Preferred name:
NM_000781.3(CYP11A1):c.835del (p.Ile279fs)
HGVS:
  • NC_000015.10:g.74343132del
  • NG_007973.1:g.29610del
  • NM_000781.3:c.835delMANE SELECT
  • NM_001099773.2:c.361del
  • NP_000772.2:p.Ile279fs
  • NP_001093243.1:p.Ile121fs
  • NC_000015.9:g.74635473del
  • NM_000781.2:c.835delA
Protein change:
I121fs
Links:
OMIM: 118485.0004; dbSNP: rs757299093
NCBI 1000 Genomes Browser:
rs757299093
Molecular consequence:
  • NM_000781.3:c.835del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001099773.2:c.361del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Congenital adrenal insufficiency with 46, XY sex reversal OR 46,XY disorder of sex development-adrenal insufficiency due to CYP11A1 deficiency
Synonyms:
P450scc DEFICIENCY; Adrenal insufficiency, congenital, with 46,XY sex reversal, partial or complete; Congenital adrenal insuffiency with 46, XY sex reversal OR 46,XY disorder of sex development-adrenal insufficiency due to CYP11A1 deficiency
Identifiers:
MONDO: MONDO:0013400; MedGen: C3151055; Orphanet: 168558; OMIM: 613743

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000039358OMIM
no assertion criteria provided
Pathogenic
(Mar 1, 2011)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

SCV002808308Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Sep 7, 2021)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Homozygous disruption of P450 side-chain cleavage (CYP11A1) is associated with prematurity, complete 46,XY sex reversal, and severe adrenal failure.

Hiort O, Holterhus PM, Werner R, Marschke C, Hoppe U, Partsch CJ, Riepe FG, Achermann JC, Struve D.

J Clin Endocrinol Metab. 2005 Jan;90(1):538-41. Epub 2004 Oct 26.

PubMed [citation]
PMID:
15507506

Severe combined adrenal and gonadal deficiency caused by novel mutations in the cholesterol side chain cleavage enzyme, P450scc.

Kim CJ, Lin L, Huang N, Quigley CA, AvRuskin TW, Achermann JC, Miller WL.

J Clin Endocrinol Metab. 2008 Mar;93(3):696-702. doi: 10.1210/jc.2007-2330. Epub 2008 Jan 8.

PubMed [citation]
PMID:
18182448
PMCID:
PMC2266942
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000039358.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

Hiort et al. (2005) reported a 46,XY patient with a homozygous defect of CYP11A1. This child was born prematurely with sex reversal and severe adrenal insufficiency (613743). Laboratory data showed diminished or absent steroidogenesis in all pathways. Molecular genetic analysis of the CYP11A1 gene revealed a homozygous single-nucleotide deletion of adenine at position 835 in exon 5, leading to a premature termination at codon 288. This mutation was predicted to delete highly conserved regions of the P450scc enzyme and thus to lead to a nonfunctional protein. Both healthy parents were heterozygous for this mutation. Hiort et al. (2005) stated that this was the first report of an inherited disruptive mutation in the CYP11A1 gene.

Kim et al. (2008) described a patient with 46,XY sex reversal and primary adrenal failure who was compound heterozygous for the 835delA mutation and a splice site mutation (IVS3+(2-3)insT; 118485.0006). External genitalia were those of a normal female; no gonads, internal reproductive structures, or adrenals were identified by MRI or ultrasound, and a genitogram revealed a blind vaginal pouch. Functional studies in COS-1 cells demonstrated no activity of 835delA-mutated P450scc. The IVS3+(2-3)insT mutation introduces an additional thymidine after the second base of the third intron that was predicted to disrupt the splice donor site. PCR amplification of RNA demonstrated that sequences corresponding to intron 3 had been retained, resulting in a nonfunctional protein.

Sahakitrungruang et al. (2010) identified the 835delA mutation in 2 sibs with adrenal insufficiency. The 46,XY sib had micropenis, severe hypospadias, bifid scrotum, and cryptorchidism; the other sib was 46,XX with normal female genitalia. The sibs carried the 835delA mutation in compound heterozygosity with a missense mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Fulgent Genetics, Fulgent Genetics, SCV002808308.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024