NM_000142.5(FGFR3):c.749C>G (p.Pro250Arg) AND Muenke syndrome
- Germline classification:
- Pathogenic/Likely pathogenic (18 submissions)
- Last evaluated:
- Dec 28, 2022
- Review status:
- 2 stars out of maximum of 4 starscriteria provided, multiple submitters, no conflicts
- Somatic classification
of clinical impact: - None
- Review status:
- (0/4) 0 stars out of maximum of 4 starsno assertion criteria provided
- Somatic classification
of oncogenicity: - None
- Review status:
- (0/4) 0 stars out of maximum of 4 starsno assertion criteria provided
- Record status:
- current
- Accession:
- RCV000017746.59
Allele description [Variation Report for NM_000142.5(FGFR3):c.749C>G (p.Pro250Arg)]
NM_000142.5(FGFR3):c.749C>G (p.Pro250Arg)
- Gene:
- FGFR3:fibroblast growth factor receptor 3 [Gene - OMIM - HGNC]
- Variant type:
- single nucleotide variant
- Cytogenetic location:
- 4p16.3
- Genomic location:
- Preferred name:
- NM_000142.5(FGFR3):c.749C>G (p.Pro250Arg)
- HGVS:
- NC_000004.12:g.1801844C>G
- NG_012632.1:g.13533C>G
- NM_000142.5:c.749C>GMANE SELECT
- NM_001163213.2:c.749C>G
- NM_001354809.2:c.749C>G
- NM_001354810.2:c.749C>G
- NM_022965.4:c.749C>G
- NP_000133.1:p.Pro250Arg
- NP_000133.1:p.Pro250Arg
- NP_001156685.1:p.Pro250Arg
- NP_001156685.1:p.Pro250Arg
- NP_001341738.1:p.Pro250Arg
- NP_001341739.1:p.Pro250Arg
- NP_075254.1:p.Pro250Arg
- NP_075254.1:p.Pro250Arg
- LRG_1021t1:c.749C>G
- LRG_1021t2:c.749C>G
- LRG_1021:g.13533C>G
- LRG_1021p1:p.Pro250Arg
- LRG_1021p2:p.Pro250Arg
- NC_000004.11:g.1803571C>G
- NM_000142.4:c.749C>G
- NM_001163213.1:c.749C>G
- NM_022965.3:c.749C>G
- NR_148971.2:n.1024C>G
- P22607:p.Pro250Arg
- p.P250R
- p.[Pro250Arg]
This HGVS expression did not pass validation- Protein change:
- P250R; PRO250ARG
- Links:
- UniProtKB: P22607#VAR_004150; OMIM: 134934.0014; dbSNP: rs4647924
- NCBI 1000 Genomes Browser:
- rs4647924
- Molecular consequence:
- NM_000142.5:c.749C>G - missense variant - [Sequence Ontology: SO:0001583]
- NM_001163213.2:c.749C>G - missense variant - [Sequence Ontology: SO:0001583]
- NM_001354809.2:c.749C>G - missense variant - [Sequence Ontology: SO:0001583]
- NM_001354810.2:c.749C>G - missense variant - [Sequence Ontology: SO:0001583]
- NM_022965.4:c.749C>G - missense variant - [Sequence Ontology: SO:0001583]
- NR_148971.2:n.1024C>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
- Observations:
- 61
Condition(s)
Assertion and evidence details
Submission Accession | Submitter | Review Status (Assertion method) | Clinical Significance (Last evaluated) | Origin | Method | Citations |
---|---|---|---|---|---|---|
SCV000038024 | OMIM | no assertion criteria provided | Pathogenic (Feb 1, 2009) | germline | literature only | |
SCV000328408 | Genomic Diagnostic Laboratory, Division of Genomic Diagnostics, Children's Hospital of Philadelphia | criteria provided, single submitter (DGD Variant Analysis Guidelines) | Pathogenic (Oct 20, 2016) | germline | clinical testing | |
SCV000996136 | Rady Children's Institute for Genomic Medicine, Rady Children's Hospital San Diego | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Apr 24, 2018) | germline | clinical testing | |
SCV000999367 | Institute for Genomic Statistics and Bioinformatics, University Hospital Bonn | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic | unknown | clinical testing | |
SCV001160790 | Cavalleri Lab, Royal College of Surgeons in Ireland | criteria provided, single submitter (ACMG Guidelines, 2015) | Likely pathogenic (Dec 11, 2019) | paternal | research | |
SCV001437547 | Department of Medical Genetics, Oslo University Hospital | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic | germline | clinical testing | |
SCV001469215 | Biochemical Molecular Genetic Laboratory, King Abdulaziz Medical City | no assertion criteria provided | Pathogenic (May 6, 2020) | germline | clinical testing | |
SCV001934470 | Institute of Human Genetics, University of Leipzig Medical Center | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Mar 5, 2021) | de novo | clinical testing | |
SCV002525634 | Seattle Children's Hospital Molecular Genetics Laboratory, Seattle Children's Hospital | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Feb 4, 2022) | germline | clinical testing | |
SCV002556384 | Genetics and Molecular Pathology, SA Pathology
| criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Feb 22, 2021) | germline | clinical testing | |
SCV002570288 | Johns Hopkins Genomics, Johns Hopkins University | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Feb 28, 2022) | germline | clinical testing | |
SCV002577535 | Laboratory of Medical Genetics, National & Kapodistrian University of Athens | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Dec 20, 2021) | germline | clinical testing | |
SCV002581897 | MGZ Medical Genetics Center | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Sep 5, 2022) | germline | clinical testing | |
SCV002771881 | Institute of Medical Genetics and Applied Genomics, University Hospital Tübingen | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Dec 28, 2022) | germline | clinical testing | |
SCV003807911 | Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Aug 26, 2022) | germline | clinical testing | |
SCV003852618 | Suma Genomics | criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic | inherited | clinical testing | |
SCV003921920 | Victorian Clinical Genetics Services, Murdoch Childrens Research Institute
| criteria provided, single submitter (ACMG Guidelines, 2015) | Pathogenic (Mar 31, 2022) | germline | clinical testing | |
SCV003927907 | Clinical Laboratory Sciences Program (CLSP), King Saud bin Abdulaziz University for Health Sciences (KSAU-HS) | no assertion criteria provided | Pathogenic (Apr 1, 2023) | germline | clinical testing |
Summary from all submissions
Ethnicity | Origin | Affected | Individuals | Families | Chromosomes tested | Number Tested | Family history | Method |
---|---|---|---|---|---|---|---|---|
not provided | unknown | yes | 1 | not provided | not provided | 1 | not provided | clinical testing |
not provided | de novo | yes | not provided | not provided | not provided | not provided | not provided | clinical testing |
not provided | germline | not provided | not provided | not provided | not provided | not provided | not provided | literature only |
not provided | germline | yes | 60 | not provided | not provided | 2 | not provided | clinical testing |
not provided | germline | unknown | not provided | not provided | not provided | not provided | not provided | clinical testing |
not provided | inherited | yes | not provided | not provided | not provided | not provided | not provided | clinical testing |
not provided | paternal | yes | not provided | not provided | not provided | not provided | not provided | research |
Citations
PubMed
Prevalence of Pro250Arg mutation of fibroblast growth factor receptor 3 in coronal craniosynostosis.
Moloney DM, Wall SA, Ashworth GJ, Oldridge M, Glass IA, Francomano CA, Muenke M, Wilkie AO.
Lancet. 1997 Apr 12;349(9058):1059-62.
- PMID:
- 9107244
Reardon W, Wilkes D, Rutland P, Pulleyn LJ, Malcolm S, Dean JC, Evans RD, Jones BM, Hayward R, Hall CM, Nevin NC, Baraister M, Winter RM.
J Med Genet. 1997 Aug;34(8):632-6.
- PMID:
- 9279753
- PMCID:
- PMC1051023
Details of each submission
From OMIM, SCV000038024.3
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | literature only | PubMed (20) |
Description
Bellus et al. (1996) described a pro250-to-arg (P250R) amino acid substitution in FGFR3 (caused by a C-to-G transversion at position 749 of the coding cDNA sequence) in 10 unrelated patients with nonsyndromic autosomal dominant or sporadic craniosynostosis. This mutation is in the extracellular domain of the FGFR3 protein and occurs precisely at the position within the FGFR3 protein analogous to that of mutations in FGFR1 (P252R; 136350.0001) and FGFR2 (P253R; 176943.0011), previously reported in Pfeiffer (101600) and Apert syndromes, respectively. They pictured the craniofacial and extremity anomalies in some of these cases.
Muenke et al. (1997) provided extensive information on a series of 61 individuals from 20 unrelated families in which coronal craniosynostosis is due to this mutation, defining a new clinical syndrome that is referred to as Muenke nonsyndromic coronal craniosynostosis (602849). At about the same time, Moloney et al. (1997) studied 26 patients with coronal craniosynostosis but no syndromic diagnosis to determine the frequency of the 749C-G (pro250-to-arg) mutation in FGFR3. Heterozygosity for the mutation was found in 8 (31%) of the 26 probands. In 2 cases, the mutation showed autosomal dominant transmission with evidence of variable expressivity; the remaining 6 cases were sporadic. Moloney et al. (1997) pointed out that the 749C nucleotide has one of the highest mutation rates described in the human genome.
Reardon et al. (1997) reported 9 individuals with the P250R mutation. The authors documented a variable clinical presentation and contrasted this with the phenotype produced by the analogous mutation in FGFR1 (P252R; 136350.0001) and FGFR2 (P253R; 176943.0011). In particular, Reardon et al. (1997) noted mental retardation in 4 of the 9 cases, which they reported was unrelated to the management of the craniosynostosis. Reardon et al. (1997) suggested that there was a significant overlap between Saethre-Chotzen syndrome (101400), a common autosomal dominant condition of craniosynostosis and limb anomalies, and the phenotype produced by this mutation. They also noted unisutural craniosynostosis in 3 of the 9 cases to emphasize the caution with which the recurrence risks should be approached in craniosynostosis.
In a study of 32 unrelated patients with features of Saethre-Chotzen syndrome, Paznekas et al. (1998) identified 7 families with the P250R mutation of the FGFR3 gene. The overlap in clinical features and the presence, in the same genes, of mutations for more than one craniosynostotic condition, such as Saethre-Chotzen, Crouzon, and Pfeiffer syndromes, suggested that the TWIST1 gene (601622), which is most frequently the site of mutations causing Saethre-Chotzen syndrome, and FGFRs are components of the same molecular pathway involved in the modulation of craniofacial and limb development in humans. The clinical features of the patients who were referred with the possible diagnosis of Saethre-Chotzen syndrome and who were found to have the FGFR3 mutation were not obviously different from those of individuals with the TWIST1 mutation.
Golla et al. (1997) described a large German family with the P250R mutation in which there was also considerable phenotypic variability among individuals with the identical mutation. The clinical features in this family had been described by von Gernet et al. (1996).
Gripp et al. (1998) found the P250R mutation in 4 of 37 patients with synostotic anterior plagiocephaly (literally 'oblique head'). In 3 mutation-positive patients with full parental studies, a parent with an extremely mild phenotype was found to carry the same mutation. None of the 6 patients with nonsynostotic plagiocephaly and none of the 4 patients with additional suture synostosis had the FGFR3 mutation.
Hollway et al. (1998) found the P250R mutation in FGFR3 in an extensive family with craniosynostosis and deafness, extending through 5 generations. The deafness was congenital, bilateral, sensorineural, and of moderate degree. Four family members had craniosynostosis evident at clinical review; 2 required surgery, and 1 was symptomatically deaf. Thirteen other affected members of the family had no evidence of craniosynostosis but were either symptomatically deaf or required bilateral hearing aids. Hollway et al. (1998) thought that the craniosynostosis and deafness were not coincidentally associated and that the low penetrance of symptomatic craniosynostosis in this family raised the possibility that some families with the P250R mutation may present with deafness only. They pointed out that 1 locus for autosomal dominant nonsyndromal deafness (DFNA6; 600965) maps to 4p16.3, the location of the FGFR3 gene.
Robin et al. (1998) described a woman who was completely clinically and radiologically normal but was carrying the P250R mutation. Graham et al. (1998) suggested that carpal-tarsal fusion may be the most specific finding for the FGFR3 mutation, being present in some individuals who did not have craniosynostosis. The patient reported by Robin et al. (1998) did not have carpal-tarsal fusion.
Lajeunie et al. (1999) studied 62 patients with sporadic or familial forms of coronal craniosynostosis. The P250R mutation was identified in 20 probands from 27 unrelated families (74%), while only 6 of 35 sporadic cases (17%) were found to have this mutation. In both familial and sporadic cases, females were more severely affected, with 68% of females but only 35% of males having brachycephaly. In the most severely affected individuals, bicoronal craniosynostosis was associated with hypertelorism and marked bulging of the temporal fossae, features that Lajeunie et al. (1999) concluded might be helpful for clinical diagnosis. Lajeunie et al. (1999) concluded that the P250R mutation is most often familial and is associated with a more severe phenotype in females than in males.
El Ghouzzi et al. (1999) found the P250R mutation in 2 of 22 cases of Saethre-Chotzen syndrome. The largest number of cases (16/22) were found to have mutations in the TWIST1 gene. In 4 of the 22 cases, no mutations were found in either TWIST1 or FGFR3.
Roscioli et al. (2001) described a patient with severe premature calvarial synostosis and epidermal hyperplasia. Although the phenotype was consistent with that of a mild presentation of Beare-Stevenson syndrome (123790), molecular analysis of FGFR2 (176943) revealed wildtype sequence only. Molecular analysis of FGFR3 identified a heterozygous P250R missense mutation in both the proposita and her mildly affected father. The cutis gyrata in the daughter was located on the left palm, accompanied by deep skin creasing of both soles. In addition, a clearly demarcated darkened linear streak (initially macular) was present on the left forearm. At the age of 18 months, normal skin overlaid the neck and flexural regions. The father showed macrocephaly with some excessive creasing/thickening of the forehead skin and hypertelorism, but the skull was otherwise normal with no evidence of past premature craniosynostosis. This case extended the clinical spectrum of the P250R mutation to encompass epidermal hyperplasia and documented the phenomenon of activated FGFR receptors stimulating common downstream developmental pathways, resulting in overlapping clinical outcomes.
Lowry et al. (2001) reported a family in which members with coronal craniosynostosis, skeletal abnormalities of the hands, and sensorineural hearing loss had the P250R mutation. One family member also had a Sprengel shoulder anomaly (184400) and multiple cervical spine anomalies consistent with Klippel-Feil anomaly (118100). The authors reported an additional case with an identical phenotype without the mutation.
Rannan-Eliya et al. (2004) studied 19 cases of Muenke syndrome due to de novo P250R mutations in FGFR3. All 10 informative cases were of paternal origin; the average paternal age at birth for all 19 cases was 34.7 years. The authors noted that exclusive paternal origin and increased paternal age had previously been described for the G380R mutation in FGFR3 (134934.0001) and mutations in FGFR2 (e.g., S252W, 176943.0010).
By surface plasmon resonance analysis and x-ray crystallography, Ibrahimi et al. (2004) characterized the effects of proline-to-arginine mutations in FGFR1c and FGFR3c on ligand binding. Both the FGFR1c P252R and FGFR3c P250R mutations exhibited an enhancement in ligand binding in comparison to their respective wildtype receptors. Binding of both mutant receptors to FGF9 (600921) was notably enhanced and implicated FGF9 as a potential pathophysiologic ligand for mutant FGFRs in mediating craniosynostosis. The crystal structure of P252R mutant in complex with FGF2 (134920) demonstrated that enhanced ligand binding was due to an additional set of receptor-ligand hydrogen bonds, similar to those gain-of-function interactions that occur in the crystal structure of FGFR2c P253R (176943.0011) mutant in complex with FGF2. However, unlike the P253R mutant, neither the FGFR1c P250R mutant nor the FGFR3c P250R mutant bound appreciably to FGF7 (148180) or FGF10 (602115). Ibrahimi et al. (2004) suggested that this might explain why limb phenotypes observed in type I Pfeiffer syndrome and Muenke syndrome are less severe than limb abnormalities observed in Apert syndrome.
Almeida et al. (2009) reported a Portuguese patient with Muenke syndrome resulting from the P250R mutation who developed an osteochondroma in the proximal metaphysis of the left tibia.
In a cohort of 182 Spanish probands with craniosynostosis, Paumard-Hernandez et al. (2015) found the most frequent mutation to be P250R in FGFR3, which was detected in 24 patients (13.2% of the cohort). The authors noted that this was somewhat lower than the 24% detected in a UK study of craniosynostosis patients by Wilkie et al. (2010).
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | not provided | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Genomic Diagnostic Laboratory, Division of Genomic Diagnostics, Children's Hospital of Philadelphia, SCV000328408.2
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | 42 | not provided | not provided | clinical testing | not provided |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | 42 | not provided | not provided | not provided |
From Rady Children's Institute for Genomic Medicine, Rady Children's Hospital San Diego, SCV000996136.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | 1 | not provided | not provided | clinical testing | PubMed (1) |
Description
This variant is a well-established cause of Muenke syndrome (PMID: 9042914, 26740388, 20301628). Functional characterization demonstrates that this missense change enhances ligand-binding in vitro compared to wild-type and affects endochondral ossification (PMID: 14613973, 22016144). This variant is present as a heterozygous change in the gnomAD population database at a frequency of 0.001% (2/267,378) and is thus presumed to be rare. It is a non-conservative amino acid substitution and is predicted by multiple in silico tools to be deleterious to protein function. Based on the combined evidence, the c.749C>G (p.Pro250Arg) variant is classified as pathogenic.
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | 1 | not provided | not provided | 1 | not provided | not provided | not provided |
From Institute for Genomic Statistics and Bioinformatics, University Hospital Bonn, SCV000999367.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | 1 | not provided | not provided | clinical testing | PubMed (1) |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | unknown | yes | 1 | not provided | not provided | 1 | not provided | not provided | not provided |
From Cavalleri Lab, Royal College of Surgeons in Ireland, SCV001160790.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | research | PubMed (2) |
Description
ACMG evidence PS3, PP2, PP3
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | paternal | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Department of Medical Genetics, Oslo University Hospital, SCV001437547.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | 14 | not provided | not provided | clinical testing | PubMed (1) |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | 14 | not provided | not provided | not provided |
From Biochemical Molecular Genetic Laboratory, King Abdulaziz Medical City, SCV001469215.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | not provided |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Institute of Human Genetics, University of Leipzig Medical Center, SCV001934470.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (1) |
Description
This variant was identified as de novo (maternity and paternity confirmed).
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | de novo | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Seattle Children's Hospital Molecular Genetics Laboratory, Seattle Children's Hospital, SCV002525634.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (1) |
Description
Muenke syndrome (MIM #602849) is diagnosed based on the presence of the recurrent p.Pro250Arg variant (PMID: 8841188).
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Genetics and Molecular Pathology, SA Pathology, SCV002556384.2
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (6) |
Description
The FGFR3 c.749C>G variant is a single nucleotide change in the FGFR3 gene that changes the amino acid proline at position 250 in the protein to arginine. This variant has been previously reported in several unrelated patients with Muenke syndrome (PMID: 9042914, 26740388, 20301628) (PS4_moderate). Functional characterization demonstrates that this missense change enhances ligand-binding in vitro compared to wild-type and affects endochondral ossification (PMID: 14613973, 22016144) (PS3). The variant was detected de novo in a patient with no family history of the disease (PS2). This variant has been reported in dbSNP (rs4647924) and is rare in population databases (2/270,300 in gnomAD, 0 homozygotes) (PM2). It is a non-conservative amino acid substitution and is predicted by multiple in silico tools to be deleterious to protein function (PP3).
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Johns Hopkins Genomics, Johns Hopkins University, SCV002570288.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (9) |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | unknown | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Laboratory of Medical Genetics, National & Kapodistrian University of Athens, SCV002577535.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (1) |
Description
PS4, PM2, PP3, PP5
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From MGZ Medical Genetics Center, SCV002581897.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | 2 | not provided | not provided | clinical testing | PubMed (1) |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | 2 | not provided | not provided | not provided |
From Institute of Medical Genetics and Applied Genomics, University Hospital Tübingen, SCV002771881.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (1) |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein, SCV003807911.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | 1 | not provided | not provided | clinical testing | PubMed (1) |
Description
ACMG classification criteria: PS3 supporting, PS4 strong, PM2 supporting, PM6 strong, PP3 supporting
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | 1 | not provided | not provided | 1 | not provided | not provided | not provided |
From Suma Genomics, SCV003852618.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (1) |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | inherited | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Victorian Clinical Genetics Services, Murdoch Childrens Research Institute, SCV003921920.2
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (6) |
Description
Based on the classification scheme VCGS_Germline_v1.3.4, this variant is classified as Pathogenic. Following criteria are met: 0101 - Gain of function is a known mechanism of disease in this gene and is associated with autosomal dominant skeletal dysplasias (OMIM). Additionally, autosomal recessive and dominant CATSHL syndrome (MIM#610474), is suspected to be due to variants with a loss of function, and dominant negative mechanism, respectively (PMID: 25614871, PMID: 24864036). (I) 0108 - This gene is associated with both recessive and dominant disease (OMIM). (I) 0112 - The condition associated with this gene has incomplete penetrance. Individuals with Muenke syndrome have been shown to inherit pathogenic variants from an asymptomatic parent (PMID: 26740388, PMID: 18000976). (I) 0115 - Variants in this gene are known to have variable expressivity. There is a wide range of clinical symptoms with variable expressivity in LADD and Muenke syndrome patients, even within the same family (PMID: 26740388, PMID: 16501574). (I) 0200 - Variant is predicted to result in a missense amino acid change from proline to arginine. (I) 0251 - This variant is heterozygous. (I) 0302 - Variant is present in gnomAD (v2) <0.001 for a dominant condition (2 heterozygotes, 0 homozygotes). (SP) 0309 - An alternative amino acid change at the same position has been observed in gnomAD (v2, v3) (2 heterozygotes, 0 homozygotes). (I) 0504 - Same amino acid change has been observed in placental mammals. (SB) 0604 - Variant is not located in an established domain, motif, hotspot or informative constraint region. (I) 0801 - This variant has strong previous evidence of pathogenicity in unrelated individuals. This variant is very well established as pathogenic, and has been reported in many individuals with Muenke syndrome with variable expressivity. Additionally, it has been observed less commonly in individuals with Saethre-Chotzen or craniosynostosis syndrome, and can be inherited from an asymptomatic parent (ClinVar, PMID: 26740388). (SP) 1206 - This variant has been shown to be paternally inherited (by trio analysis). (I) Legend: (SP) - Supporting pathogenic, (I) - Information, (SB) - Supporting benign
# | Sample | Method | Observation | |||||||
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Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
From Clinical Laboratory Sciences Program (CLSP), King Saud bin Abdulaziz University for Health Sciences (KSAU-HS), SCV003927907.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
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1 | not provided | not provided | not provided | not provided | clinical testing | not provided |
# | Sample | Method | Observation | |||||||
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Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
Last Updated: Nov 24, 2024