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NM_000558.5(HBA1):c.262C>T (p.His88Tyr) AND HEMOGLOBIN M (SENDAI)

Germline classification:
other (1 submission)
Last evaluated:
Sep 1, 1999
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000017106.7

Allele description [Variation Report for NM_000558.5(HBA1):c.262C>T (p.His88Tyr)]

NM_000558.5(HBA1):c.262C>T (p.His88Tyr)

Genes:
LOC106804613:hemoglobin subunit alpha 1 recombination region [Gene]
HBA1:hemoglobin subunit alpha 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p13.3
Genomic location:
Preferred name:
NM_000558.5(HBA1):c.262C>T (p.His88Tyr)
Other names:
H87Y
HGVS:
  • NC_000016.10:g.177095C>T
  • NG_000006.1:g.37958C>T
  • NG_046166.1:g.2578C>T
  • NG_059186.1:g.5445C>T
  • NM_000558.5:c.262C>TMANE SELECT
  • NP_000549.1:p.His88Tyr
  • LRG_1225t1:c.262C>T
  • LRG_1225:g.5445C>T
  • LRG_1225p1:p.His88Tyr
  • NC_000016.9:g.227094C>T
Protein change:
H88Y; HIS87TYR
Links:
OMIM: 141800.0093; dbSNP: rs28928876
NCBI 1000 Genomes Browser:
rs28928876
Molecular consequence:
  • NM_000558.5:c.262C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
HEMOGLOBIN M (SENDAI)
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000037378OMIM
no assertion criteria provided
other
(Sep 1, 1999)
germlineliterature only

PubMed (15)
[See all records that cite these PMIDs]

Heller, P. Hemoglobin M (Chicago) and M (Kankakee). In: Lehmann, H., Betke, K. (eds.) Haemoglobin-Colloquium. Stuttgart: Georg Thieme Verlag (pub.) 47-49, 1962.

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Hemoglobinopathies in Japan.

Shibata S.

Hemoglobin. 1981;5(5):509-15. No abstract available.

PubMed [citation]
PMID:
7275668

Hemoglobin M Iwate is caused by a C----T transition in codon 87 of the human alpha 1-globin gene.

Horst J, Assum G, Griese EU, Eigel A, Hampl W, Kohne E.

Hum Genet. 1987 Jan;75(1):53-5.

PubMed [citation]
PMID:
3026948
See all PubMed Citations (15)

Details of each submission

From OMIM, SCV000037378.7

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (15)

Description

Hb Iwate was the first variant hemoglobin found in Japan (Shibata et al., 1960). Familial cyanosis had been recognized for about 200 years in the prefecture of Iwate in Honshu, where about 70 affected persons were identified in the 1950s. It was called 'kuchikuro,' or 'blackmouth.' In each form of methemoglobinemia (see 617973), the heme iron is stabilized in the ferric form. Patients with the Hb M alpha forms are cyanotic at birth; those with the Hb M beta forms are usually not cyanotic until they are 3 months of age. Horst et al. (1987) showed that the Iwate mutation involves the alpha-1 globin gene. Specifically, they demonstrated a CAC-to-TAC mutation in codon 87 of that gene. They showed that the Iwate mutation can be identified directly on RsaI digestion. See Meyering et al. (1960), Shibata et al. (1961), Gerald and Efron (1961), Miyaji et al. (1962), Heller (1962), Heller et al. (1962), Tonz et al. (1962), Shibata (1964), Tamura (1964), Shimizu et al. (1965), Pik and Tonz (1966), Maggio et al. (1981), and Mayne et al. (1986).

Ameri et al. (1999) likewise determined that the molecular defect in 2 patients with Hb M (Kankakee) was his87 to tyr in the HBA1 gene. The proportion of Hb M (Kankakee) observed was higher than that predicted for an alpha-1-globin variant. They presented evidence suggesting that the greater-than-expected proportion of Hb M (Kankakee) results from preferential association of the electronegative beta-globin chains with the alpha-(M)-globin chains that are more electropositive than normal alpha-globin chains.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 9, 2024