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NM_000860.6(HPGD):c.418G>C (p.Ala140Pro) AND Cranioosteoarthropathy

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Nov 1, 2009
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000008379.8

Allele description [Variation Report for NM_000860.6(HPGD):c.418G>C (p.Ala140Pro)]

NM_000860.6(HPGD):c.418G>C (p.Ala140Pro)

Gene:
HPGD:15-hydroxyprostaglandin dehydrogenase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4q34.1
Genomic location:
Preferred name:
NM_000860.6(HPGD):c.418G>C (p.Ala140Pro)
HGVS:
  • NC_000004.12:g.174508699C>G
  • NG_011689.1:g.18943G>C
  • NM_000860.6:c.418G>CMANE SELECT
  • NM_001145816.3:c.418G>C
  • NM_001256301.1:c.55G>C
  • NM_001256305.2:c.418G>C
  • NM_001256306.2:c.218-13075G>C
  • NM_001256307.2:c.55G>C
  • NM_001363574.2:c.418G>C
  • NP_000851.2:p.Ala140Pro
  • NP_001139288.1:p.Ala140Pro
  • NP_001243230.1:p.Ala19Pro
  • NP_001243234.1:p.Ala140Pro
  • NP_001243236.1:p.Ala19Pro
  • NP_001350503.1:p.Ala140Pro
  • NC_000004.11:g.175429850C>G
  • P15428:p.Ala140Pro
Protein change:
A140P; ALA140PRO
Links:
UniProtKB: P15428#VAR_046209; OMIM: 601688.0001; dbSNP: rs121434480
NCBI 1000 Genomes Browser:
rs121434480
Molecular consequence:
  • NM_001256306.2:c.218-13075G>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000860.6:c.418G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001145816.3:c.418G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001256301.1:c.55G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001256305.2:c.418G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001256307.2:c.55G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363574.2:c.418G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cranioosteoarthropathy (COA)
Synonyms:
Cranio-osteoarthropathy
Identifiers:
MONDO: MONDO:0015466; MedGen: C2678439

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000028587OMIM
no assertion criteria provided
Pathogenic
(Nov 1, 2009)
germlineliterature only

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Mutations in 15-hydroxyprostaglandin dehydrogenase cause primary hypertrophic osteoarthropathy.

Uppal S, Diggle CP, Carr IM, Fishwick CW, Ahmed M, Ibrahim GH, Helliwell PS, Latos-Bieleńska A, Phillips SE, Markham AF, Bennett CP, Bonthron DT.

Nat Genet. 2008 Jun;40(6):789-93. doi: 10.1038/ng.153. Epub 2008 May 25. Erratum in: Nat Genet. 2008 Jul;40(7):927.

PubMed [citation]
PMID:
18500342

Pachydermoperiostosis in childhood.

Sinha GP, Curtis P, Haigh D, Lealman GT, Dodds W, Bennett CP.

Br J Rheumatol. 1997 Nov;36(11):1224-7.

PubMed [citation]
PMID:
9402870
See all PubMed Citations (5)

Details of each submission

From OMIM, SCV000028587.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (5)

Description

In affected members of 2 consanguineous Pakistani families with autosomal recessive cranioosteoarthropathy (see 259100), Uppal et al. (2008) identified a homozygous 418G-C transversion in exon 4 of the HPGD gene, resulting in an ala140-to-pro (A140P) substitution. Clinical features included infantile onset of swelling of the joints, digital clubbing, hyperhidrosis, delayed closure of the fontanels, periostosis, and variable patent ductus arteriosus. Pachydermia was not a prominent feature. In vitro functional analysis showed that the mutant protein had no detectable activity. Modeling suggested that the mutation disrupts the binding of the substrate prostaglandin E. The mutation was not identified in 100 control individuals of Pakistani origin. One of the families had been reported by Sinha et al. (1997) and the other by Dabir et al. (2007).

In 3 affected individuals from 2 unrelated Turkish families with primary hypertrophic osteoarthropathy (PHOAR1; 259100), Yuksel-Konuk et al. (2009) identified homozygosity for the A140P mutation in the HPGD gene. The mutation segregated with disease in both families and was not found in 100 controls. The 2 families originated from different cities and denied any relationship; haplotype information was unavailable.

In a 3-year-old boy (patient 2), born to consanguineous Indian parents, with PHOAR1, Radhakrishnan et al. (2020) identified homozygosity for the A140P mutation in the HPGD gene. The mother was a carrier for the mutation, but the father was not tested. Functional studies were not performed.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024