U.S. flag

An official website of the United States government

NM_000350.3(ABCA4):c.4139C>T (p.Pro1380Leu) AND Severe early-childhood-onset retinal dystrophy

Germline classification:
Likely pathogenic (4 submissions)
Last evaluated:
Jan 30, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000008362.19

Allele description [Variation Report for NM_000350.3(ABCA4):c.4139C>T (p.Pro1380Leu)]

NM_000350.3(ABCA4):c.4139C>T (p.Pro1380Leu)

Gene:
ABCA4:ATP binding cassette subfamily A member 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p22.1
Genomic location:
Preferred name:
NM_000350.3(ABCA4):c.4139C>T (p.Pro1380Leu)
Other names:
NP_000341.2:p.(Pro1380Leu)
HGVS:
  • NC_000001.11:g.94031110G>A
  • NG_009073.1:g.95040C>T
  • NG_009073.2:g.95038C>T
  • NM_000350.3:c.4139C>TMANE SELECT
  • NM_001425324.1:c.3917C>T
  • NP_000341.2:p.Pro1380Leu
  • NP_000341.2:p.Pro1380Leu
  • NP_001412253.1:p.Pro1306Leu
  • NC_000001.10:g.94496666G>A
  • NM_000350.2:c.4139C>T
  • P78363:p.Pro1380Leu
Protein change:
P1306L; PRO1380LEU
Links:
UniProtKB: P78363#VAR_008443; OMIM: 601691.0026; dbSNP: rs61750130
NCBI 1000 Genomes Browser:
rs61750130
Molecular consequence:
  • NM_000350.3:c.4139C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425324.1:c.3917C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Severe early-childhood-onset retinal dystrophy (STGD1)
Synonyms:
MACULAR DYSTROPHY WITH FLECKS, TYPE 1; STGD; Stargardt macular dystrophy; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0009549; MeSH: D000080362; MedGen: C1855465; Orphanet: 827; OMIM: 248200

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000028570OMIM
no assertion criteria provided
Pathogenic
(May 1, 2006)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

SCV000598970NIHR Bioresource Rare Diseases, University of Cambridge
no assertion criteria provided
Likely pathogenic
(Jan 1, 2015)
unknownresearch

PubMed (2)
[See all records that cite these PMIDs]

SCV001548095Institute of Medical Molecular Genetics, University of Zurich
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Jan 30, 2021)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

SCV005047010Ophthalmo-Genetics Lab, Instituto de Oftalmologia Conde de Valenciana
no assertion criteria provided
Pathogenicgermlineresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedresearch, clinical testing
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
Europeanunknownyes3not providednot provided3not providedresearch

Citations

PubMed

The rod photoreceptor ATP-binding cassette transporter gene, ABCR, and retinal disease: from monogenic to multifactorial.

Shroyer NF, Lewis RA, Allikmets R, Singh N, Dean M, Leppert M, Lupski JR.

Vision Res. 1999 Jul;39(15):2537-44. Review.

PubMed [citation]
PMID:
10396622

Case of Stargardt disease caused by uniparental isodisomy.

Fingert JH, Eliason DA, Phillips NC, Lotery AJ, Sheffield VC, Stone EM.

Arch Ophthalmol. 2006 May;124(5):744-5. No abstract available.

PubMed [citation]
PMID:
16682602
See all PubMed Citations (7)

Details of each submission

From OMIM, SCV000028570.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In a 3-generation family manifesting both Stargardt disease (STGD1; 248200) and age-related macular degeneration (ARMD2; 153800), Shroyer et al. (1999) identified heterozygosity for a 4139C-T transition in the ABCA4 gene, resulting in a pro1380-to-leu (P1380L) substitution, in the paternal grandmother with ARMD. The proband and his 2 paternal cousins, who all had Stargardt disease, were compound heterozygous for the P1380L mutation and a 2461T-A transversion in the ABCA4 gene, resulting in a trp821-to-arg (W821R; 601691.0036) substitution, and a 3365G-A transition in the ABCA4 gene, resulting in a glu1122-to-lys (E1122K; 601691.0037) substitution, respectively. Shroyer et al. (1999) suggested that carrier relatives of STGD patients may have an increased risk of developing ARMD.

In a female patient with Stargardt disease, Fingert et al. (2006) identified homozygosity for a pro1380-to-leu mutation in the ABCA4 gene caused by uniparental isodisomy of chromosome 1. Her father was heterozygous for the mutation and the mother was not a carrier.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From NIHR Bioresource Rare Diseases, University of Cambridge, SCV000598970.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1European1not providednot providedresearch PubMed (2)
2European1not providednot providedresearch PubMed (2)
3European1not providednot providedresearch PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyes1not providednot provided1not providednot providednot provided
2unknownyes1not providednot provided1not providednot providednot provided
3unknownyes1not providednot provided1not providednot providednot provided

From Institute of Medical Molecular Genetics, University of Zurich, SCV001548095.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Ophthalmo-Genetics Lab, Instituto de Oftalmologia Conde de Valenciana, SCV005047010.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024