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NM_001103146.3(GIGYF2):c.167A>G (p.Asn56Ser) AND Parkinson disease 11, autosomal dominant, susceptibility to

Germline classification:
risk factor (1 submission)
Last evaluated:
Aug 1, 2009
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000000789.5

Allele description [Variation Report for NM_001103146.3(GIGYF2):c.167A>G (p.Asn56Ser)]

NM_001103146.3(GIGYF2):c.167A>G (p.Asn56Ser)

Gene:
GIGYF2:GRB10 interacting GYF protein 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q37.1
Genomic location:
Preferred name:
NM_001103146.3(GIGYF2):c.167A>G (p.Asn56Ser)
HGVS:
  • NC_000002.12:g.232747740A>G
  • NG_011847.1:g.55436A>G
  • NM_001103146.3:c.167A>GMANE SELECT
  • NM_001103147.2:c.167A>G
  • NM_001103148.2:c.167A>G
  • NM_015575.4:c.167A>G
  • NP_001096616.1:p.Asn56Ser
  • NP_001096617.1:p.Asn56Ser
  • NP_001096618.1:p.Asn56Ser
  • NP_056390.2:p.Asn56Ser
  • NC_000002.11:g.233612450A>G
  • NM_001103146.1:c.167A>G
  • NM_001103146.2:c.167A>G
  • NR_103492.1:n.280A>G
  • Q6Y7W6:p.Asn56Ser
Protein change:
N56S; ASN56SER
Links:
UniProtKB: Q6Y7W6#VAR_044439; OMIM: 612003.0001; dbSNP: rs72554080
NCBI 1000 Genomes Browser:
rs72554080
Molecular consequence:
  • NM_001103146.3:c.167A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001103147.2:c.167A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001103148.2:c.167A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_015575.4:c.167A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_103492.1:n.280A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Parkinson disease 11, autosomal dominant, susceptibility to
Synonyms:
Parkinson disease 11
Identifiers:
MONDO: MONDO:0011896; MedGen: C4083045; Orphanet: 411602; OMIM: 607688

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000020939OMIM
no assertion criteria provided
risk factor
(Aug 1, 2009)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Mutations in the GIGYF2 (TNRC15) gene at the PARK11 locus in familial Parkinson disease.

Lautier C, Goldwurm S, Dürr A, Giovannone B, Tsiaras WG, Pezzoli G, Brice A, Smith RJ.

Am J Hum Genet. 2008 Apr;82(4):822-33. doi: 10.1016/j.ajhg.2008.01.015. Epub 2008 Mar 20.

PubMed [citation]
PMID:
18358451
PMCID:
PMC2427211

Variation in GIGYF2 is not associated with Parkinson disease.

Nichols WC, Kissell DK, Pankratz N, Pauciulo MW, Elsaesser VE, Clark KA, Halter CA, Rudolph A, Wojcieszek J, Pfeiffer RF, Foroud T; Parkinson Study Group-PROGENI Investigators.

Neurology. 2009 Jun 2;72(22):1886-92. doi: 10.1212/01.wnl.0000346517.98982.1b. Epub 2009 Mar 11.

PubMed [citation]
PMID:
19279319
PMCID:
PMC2690967
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000020939.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In affected members of 4 unrelated European Caucasian families with Parkinson disease-11 (PARK11; 607688), Lautier et al. (2008) identified a heterozygous 167A-G transition in exon 2 of the GIGYF2 gene, resulting in an asn56-to-ser (N56S) substitution in a highly conserved region. Disease onset ranged from age 41 to 73 years. There were 2 unaffected disease carriers, suggesting incomplete penetrance.

Nichols et al. (2009) identified a heterozygous N56S substitution in 1 of 96 probands with familial PD showing linkage to the PARK11 locus on chromosome 2q. The N56S substitution was also identified in another proband from an extended sample of 566 multiplex PD families. In 1 family, 2 sisters with PD with onset at ages 58 and 63, respectively, carried the heterozygous mutation. A deceased parent was reportedly affected. In the second family, 1 patient with PD carried the mutation, another patient who reportedly had PD but was not examined, also carried the mutation, whereas 2 additional family members with PD did not carry the mutation. Thus, in the second family, the N56S substitution did not segregate completely with the disorder. The N56S substitution was not identified in 1,447 controls. Nichols et al. (2009) raised doubts about the pathogenicity of mutations in the GIGYF2 gene as causative for PD.

Zimprich et al. (2009) identified the N56S variant in 1 of 669 PD patients and in 1 of 1,051 control individuals. The patient with PD had an affected sister, who did not carry the N56S variant. The authors concluded that the N56S variant does not play a major role in the pathogenesis of PD.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 30, 2024