| | LOC130055392, LOC130055393 +780 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC126862060, LOC126862061 +3282 more | Copy number gain | See cases | |
| | LOC125048449, LOC125048450 +3277 more | Copy number gain | See cases | |
| | LOC112214170, LOC112214171 +840 more | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number gain | See cases | |
| | LOC126861917, LOC126861918 +225 more | Copy number loss | See cases | |
| | BAZ1A, BAZ1A-AS1 +156 more | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | LOC108281111, LOC110120901 +19 more | Copy number gain | See cases | |
| | | Copy number loss | See cases | |
| | LOC108281111, LOC110121326 +6 more | Copy number gain | See cases | |
| | LOC108281111, LOC110120902 +10 more | Copy number loss | See cases | |
| | LOC108281111, PAX9 +1 more | Deletion | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Duplication (5 prime UTR variant) | Selective tooth agenesis | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | not provided +1 more | |
| | | Single nucleotide variant (intron variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (intron variant) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Duplication (intron variant) | PAX9-related disorder | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (5 prime UTR variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant +1 more) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant +1 more) | Partial congenital absence of teeth | |
| | | Single nucleotide variant | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (intron variant) | PAX9-related disorder | |
| | | Copy number gain | See cases | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (synonymous variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant) | Inborn genetic diseases | |
| | | Single nucleotide variant (missense variant) | not provided | |
| | | Single nucleotide variant (missense variant) | not provided | |
| | | Single nucleotide variant (synonymous variant) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (missense variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant) | Tooth agenesis, selective, 3 | |
| | | Duplication (frameshift variant) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (missense variant) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (missense variant) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (missense variant) | Tooth agenesis, selective, 3 | |
| | | Deletion (inframe_deletion) | Partial congenital absence of teeth | |
| | | Duplication (frameshift variant) | not provided | |
| | | Single nucleotide variant (nonsense) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant) | PAX9-related disorder | |
| | | Deletion (frameshift variant) | Tooth agenesis, selective, 3 | |
| | | Deletion (frameshift variant) | PAX9-related disorder | |
| | | Single nucleotide variant (missense variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant) | Oligodontia | |
| | | Single nucleotide variant (missense variant) | Oligodontia | |
| | | Single nucleotide variant (synonymous variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (missense variant) | Oligodontia | |
| | | Single nucleotide variant (synonymous variant) | Partial congenital absence of teeth | |
| | | Indel (nonsense) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (nonsense) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (missense variant) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (missense variant) | Inborn genetic diseases | |
| | | Deletion (frameshift variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (synonymous variant) | Tooth agenesis, selective, 3 | |
| | | Duplication (frameshift variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant) | Inborn genetic diseases | |
| | | Single nucleotide variant (missense variant) | not provided | |
| | | Single nucleotide variant (missense variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant) | Partial congenital absence of teeth | |
| | | Deletion (frameshift variant) | Oligodontia | |
| | | Single nucleotide variant (missense variant) | not provided | |
| | | Single nucleotide variant (missense variant) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (missense variant) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (missense variant) | Partial congenital absence of teeth +1 more | GConflicting classifications of pathogenicity |
| | | Deletion (frameshift variant) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (missense variant) | Tooth agenesis, selective, 3 | |
| | | Single nucleotide variant (missense variant) | Partial congenital absence of teeth | |
| | | Single nucleotide variant (missense variant) | not provided | |
| | | Deletion (frameshift variant) | Tooth agenesis, selective, 3 | |
| | | Duplication (frameshift variant) | not provided | |
| | | Single nucleotide variant (missense variant) | Tooth agenesis, selective, 3 | |