ATP6AP2[gene] - ClinVar - NCBI

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	Variation	Gene (Protein Change)	Type (Consequence)	Condition	Classification, Review status
Select item 488014	Single allele	ARSF, CFAP47 +2632 more	Duplication	Autism +1 more	GPathogenic
Select item 146764	GRCh38/hg38 Xp22.33-q28(chrX:10001-156030895)x1	ABCB7, ABCD1 +2634 more	Copy number loss	See cases	GPathogenic
Select item 160983	GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x1	LOC130067918, LOC130067919 +2633 more	Copy number loss	See cases	GPathogenic
Select item 160897	GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x3	LOC130068528, LOC130068529 +2634 more	Copy number gain	See cases	GPathogenic
Select item 160890	GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x1	ARMCX5, ARMCX5-GPRASP2 +2634 more	Copy number loss	See cases	GPathogenic
Select item 148082	GRCh38/hg38 Xp22.33-11.23(chrX:10679-49157514)x1	LOC130067965, LOC130067966 +920 more	Copy number loss	See cases	GPathogenic
Select item 148051	GRCh38/hg38 Xp22.33-q13.3(chrX:10679-76420505)x3	LOC130068369, LOC130068370 +1399 more	Copy number gain	See cases	GPathogenic
Select item 148018	GRCh38/hg38 Xp22.33-11.22(chrX:10679-52213731)x1	LOC130067939, LOC130067940 +1014 more	Copy number loss	See cases	GPathogenic
Select item 145623	GRCh38/hg38 Xp22.33-11.22(chrX:10679-52857805)x3	ACE2, ACE2-DT +1025 more	Copy number gain	See cases	GPathogenic
Select item 144263	GRCh38/hg38 Xp22.33-11.23(chrX:10679-50059388)x1	SYP, SYP-AS1 +984 more	Copy number loss	See cases	GPathogenic
Select item 144172	GRCh38/hg38 Xp22.33-q28(chrX:10679-156022826)x4	APOO, APOOL +2634 more	Copy number gain	See cases	GPathogenic
Select item 59181	GRCh38/hg38 Xp22.33-11.23(chrX:10679-48344725)x1	LOC130067922, LOC130067923 +819 more	Copy number loss	See cases	GPathogenic
Select item 57339	GRCh38/hg38 Xp22.33-11.22(chrX:10679-52809182)x1	LOC130068061, LOC130068062 +1023 more	Copy number loss	See cases	GPathogenic
Select item 57087	GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x1	LOC130068308, LOC130068309 +2634 more	Copy number loss	See cases	GPathogenic
Select item 57086	GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x3	ABCB7, ABCD1 +2634 more	Copy number gain	See cases	GPathogenic
Select item 155281	GRCh38/hg38 Xp22.33-11.22(chrX:10701-53131191)x1	LOC121627970, LOC121627971 +1042 more	Copy number loss	See cases	GPathogenic
Select item 154558	GRCh38/hg38 Xp22.33-q28(chrX:10701-156003229)x3	LOC126863325, LOC126863326 +2633 more	Copy number gain	See cases	GPathogenic
Select item 152052	GRCh38/hg38 Xp22.33-11.22(chrX:10701-53750424)x1	VCX3A, VCX3B +1070 more	Copy number loss	See cases	GPathogenic
Select item 150510	GRCh38/hg38 Xp22.33-q21.31(chrX:10701-88318651)x1	LOC130067920, LOC130067921 +1476 more	Copy number loss	See cases	GPathogenic
Select item 150498	GRCh38/hg38 Xp22.33-11.1(chrX:10701-58517661)x1	ACE2, ACE2-DT +1164 more	Copy number loss	See cases	GPathogenic
Select item 148821	GRCh38/hg38 Xp22.33-q22.3(chrX:10701-106113403)x1	LOC126863242, LOC126863243 +1629 more	Copy number loss	See cases	GPathogenic
Select item 148478	GRCh38/hg38 Xp22.33-11.21(chrX:10701-58055036)x1	LOC130068348, LOC130068349 +1164 more	Copy number loss	See cases	GPathogenic
Select item 148356	GRCh38/hg38 Xp22.33-11.22(chrX:10701-52033734)x1	ZNF41, ZNF630 +1009 more	Copy number loss	See cases	GPathogenic
Select item 148339	GRCh38/hg38 Xp22.33-11.23(chrX:10701-49071220)x1	LOC130068042, LOC130068043 +910 more	Copy number loss	See cases	GPathogenic
Select item 146861	GRCh38/hg38 Xp22.33-q28(chrX:10701-156003229)x1	LOC130068075, LOC130068076 +2633 more	Copy number loss	See cases	GPathogenic
Select item 146857	GRCh38/hg38 Xp22.33-q25(chrX:10701-128393708)	LOC130068153, LOC130068154 +1933 more	Copy number loss	See cases	GPathogenic
Select item 145166	GRCh38/hg38 Xp22.33-q11.1(chrX:10701-62712219)x1	ACE2, ACE2-DT +1164 more	Copy number loss	See cases	GPathogenic
Select item 144544	GRCh38/hg38 Xp22.33-11.21(chrX:10701-58055053)x1	SYP, SYP-AS1 +1164 more	Copy number loss	See cases	GPathogenic
Select item 144465	GRCh38/hg38 Xp22.33-q28(chrX:10701-156003242)x1	LOC130068278, LOC130068279 +2633 more	Copy number loss	See cases	GPathogenic
Select item 144429	GRCh38/hg38 Xp22.33-q28(chrX:10701-156003242)x3	LOC130068310, LOC130068311 +2633 more	Copy number gain	See cases	GPathogenic
Select item 144335	GRCh38/hg38 Xp22.33-11.22(chrX:10701-52857805)x1	LOC130068203, LOC130068204 +1025 more	Copy number loss	See cases	GPathogenic
Select item 144310	GRCh38/hg38 Xp22.33-q28(chrX:10701-155978689)x1	VAMP7, VBP1 +2632 more	Copy number loss	See cases	GPathogenic
Select item 161089	GRCh38/hg38 Xp22.33-q28(chrX:14245-155999293)x1	ABCB7, ABCD1 +2633 more	Copy number loss	See cases	GPathogenic
Select item 57161	GRCh38/hg38 Xp22.33-q28(chrX:20140-155699618)x1	LOC107988022, LOC107988024 +2629 more	Copy number loss	See cases	GPathogenic
Select item 57160	GRCh38/hg38 Xp22.33-q28(chrX:20140-155699618)x3	LOC130067944, LOC130067945 +2629 more	Copy number gain	See cases	GPathogenic
Select item 152900	GRCh38/hg38 Xp22.33-q28(chrX:20297-156016920)x3	ABCB7, ABCD1 +2634 more	Copy number gain	See cases	GPathogenic
Select item 145995	GRCh38/hg38 Xp22.33-q28(chrX:20297-156026127)x1	ABCB7, ABCD1 +2634 more	Copy number loss	See cases	GPathogenic
Select item 145162	GRCh38/hg38 Xp22.33-q28(chrX:20297-155999253)x3	LOC130067929, LOC130067930 +2633 more	Copy number gain	See cases	GPathogenic
Select item 58553	GRCh38/hg38 Xp22.33-q28(chrX:26101-155999293)x3	LOC130068219, LOC130068220 +2633 more	Copy number gain	See cases	GPathogenic
Select item 161091	GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x3	ABCB7, ABCD1 +2632 more	Copy number gain	See cases	GPathogenic
Select item 161088	GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x1	VAMP7, VBP1 +2632 more	Copy number loss	See cases	GPathogenic
Select item 59186	GRCh38/hg38 Xp22.33-11.21(chrX:26102-57302794)x1	CLCN4, CLCN5 +1155 more	Copy number loss	See cases	GPathogenic
Select item 58555	GRCh38/hg38 Xp22.33-q28(chrX:27245-155996431)x3	LOC126863224, LOC126863225 +2632 more	Copy number gain	See cases	GPathogenic
Select item 147257	GRCh38/hg38 Xp22.33-q28(chrX:40904-155998166)x1	LOC121627971, LOC121627972 +2633 more	Copy number loss	See cases	GPathogenic
Select item 155374	GRCh38/hg38 Xp22.33-q28(chrX:251879-156004066)x1	FUNDC1, FUNDC2 +2633 more	Copy number loss	See cases	GPathogenic
Select item 155366	GRCh38/hg38 Xp22.33-q28(chrX:251879-156004066)x3	LOC126863244, LOC126863245 +2633 more	Copy number gain	See cases	GPathogenic
Select item 155063	GRCh38/hg38 Xp22.33-11.21(chrX:251879-56428859)x1	ACE2, ACE2-DT +1131 more	Copy number loss	See cases	GPathogenic
Select item 153937	GRCh38/hg38 Xp22.33-q24(chrX:251879-118847157)x3	MAGED2, MAGED4 +1799 more	Copy number gain	See cases	GPathogenic
Select item 153302	GRCh38/hg38 Xp22.33-11.22(chrX:251879-50289363)x1	ACE2, ACE2-DT +987 more	Copy number loss	See cases	GPathogenic
Select item 155152	GRCh38/hg38 Xp22.33-q28(chrX:251880-156004066)x3	ABCB7, ABCD1 +2633 more	Copy number gain	See cases	GPathogenic
Select item 154249	GRCh38/hg38 Xp22.33-q12(chrX:251880-66445845)x1	LOC130067990, LOC130067991 +1217 more	Copy number loss	See cases	GPathogenic
Select item 153753	GRCh38/hg38 Xp22.33-11.22(chrX:251880-51643625)x1	ACE2, ACE2-DT +1000 more	Copy number loss	See cases	GPathogenic
Select item 152158	GRCh38/hg38 Xp22.33-q28(chrX:251880-156004066)x1	LOC130068098, LOC130068099 +2633 more	Copy number loss	See cases	Gconflicting data from submitters
Select item 152157	GRCh38/hg38 Xp22.33-q28(chrX:251880-156004066)x4	ABCB7, ABCD1 +2633 more	Copy number gain	See cases	GPathogenic
Select item 151130	GRCh38/hg38 Xp22.33-q28(chrX:251880-156004181)x3	LOC126863315, LOC126863316 +2633 more	Copy number gain	See cases	GPathogenic
Select item 59190	GRCh38/hg38 Xp22.33-11.1(chrX:253129-58271563)x1	PAGE4, PAGE5 +1164 more	Copy number loss	See cases	GPathogenic
Select item 59200	GRCh38/hg38 Xp22.33-q22.1(chrX:675360-100368517)x1	LOC125467739, LOC125467740 +1494 more	Copy number loss	See cases	GPathogenic
Select item 58559	GRCh38/hg38 Xp22.33-11.3(chrX:675360-46016699)x3	LOC129391299, LOC130067890 +709 more	Copy number gain	See cases	GPathogenic
Select item 150422	GRCh38/hg38 Xp22.33-q28(chrX:1085618-155699644)x1	LOC130068055, LOC130068056 +2612 more	Copy number loss	See cases	GPathogenic
Select item 152899	GRCh38/hg38 Xp22.33-q28(chrX:2299223-155992188)x3	CNKSR2, COL4A5 +2604 more	Copy number gain	See cases	GPathogenic
Select item 3242589	GRCh38/hg38 Xp22.33-q28(chrX:2757837-156030895)x2	LOC130068417, LOC130068418 +2599 more	Copy number gain	Klinefelter syndrome	GPathogenic
Select item 147627	GRCh38/hg38 Xp22.33-q28(chrX:2765636-155522304)x3	LOC130068152, LOC130068153 +2594 more	Copy number gain	See cases	GPathogenic
Select item 59202	GRCh38/hg38 Xp22.33-11.21(chrX:2769041-58055036)x1	RBM10, RBM3 +1131 more	Copy number loss	See cases	GPathogenic
Select item 147683	GRCh38/hg38 Xp22.33-q28(chrX:2782275-155611794)x2	LOC130068468, LOC130068469 +2594 more	Copy number gain	See cases	GPathogenic
Select item 58586	GRCh38/hg38 Xp22.33-q28(chrX:2790845-155699618)x3	LOC130067984, LOC130067985 +2596 more	Copy number gain	See cases	GPathogenic
Select item 57225	GRCh38/hg38 Xp22.33-q28(chrX:3092486-155699618)x2	ABCB7, ABCD1 +2586 more	Copy number gain	See cases	GPathogenic
Select item 145979	GRCh38/hg38 Xp22.31-11.22(chrX:8176030-53962833)x1	ACE2, ACE2-DT +961 more	Copy number loss	See cases	GPathogenic
Select item 149705	GRCh38/hg38 Xp22.2-q27.3(chrX:13020141-143473520)x1	ABCB7, ACE2 +2047 more	Copy number loss	See cases	GPathogenic
Select item 146240	GRCh38/hg38 Xp21.1-q28(chrX:36237706-156022206)x1	LOC130068242, LOC130068243 +2103 more	Copy number loss	See cases	GPathogenic
Select item 145974	GRCh38/hg38 Xp21.1-q28(chrX:37076284-156016920)x1	LOC126863280, LOC126863281 +2099 more	Copy number loss	See cases	GPathogenic
Select item 145549	GRCh38/hg38 Xp11.4(chrX:40075793-40934203)x2	ATP6AP2, BCOR +55 more	Copy number gain	See cases	GUncertain significance
Select item 145963	GRCh38/hg38 Xp11.4(chrX:40165688-40662855)x2	ATP6AP2, BCOR +29 more	Copy number gain	See cases	GLikely pathogenic
Select item 60292	GRCh38/hg38 Xp11.4(chrX:40375929-40810369)x2	ATP6AP2, CXorf38 +20 more	Copy number gain	See cases	GUncertain significance
Select item 674230	NM_005765.2(ATP6AP2):c.-283G>T	ATP6AP2, LOC130068148	Single nucleotide variant	not provided	GLikely benign
Select item 677651	NM_005765.2(ATP6AP2):c.-248A>T	ATP6AP2, LOC130068148	Single nucleotide variant	not provided	GLikely benign
Select item 677652	NM_005765.2(ATP6AP2):c.-224C>T	ATP6AP2, LOC130068148	Single nucleotide variant	not provided	GLikely benign
Select item 673879	NM_005765.2(ATP6AP2):c.-157T>C	ATP6AP2	Single nucleotide variant	not provided	GLikely benign
Select item 670923	NM_005765.2(ATP6AP2):c.-120G>C	ATP6AP2	Single nucleotide variant	not provided	GLikely benign
Select item 1683316	NM_005765.3(ATP6AP2):c.-70C>T	ATP6AP2	Single nucleotide variant (5 prime UTR variant)	not specified	GUncertain significance
Select item 204913	NM_005765.3(ATP6AP2):c.-46C>A	ATP6AP2	Single nucleotide variant (5 prime UTR variant)	not specified	GBenign
Select item 382919	NM_005765.3(ATP6AP2):c.-36C>T	ATP6AP2	Single nucleotide variant (5 prime UTR variant)	not specified	GLikely benign
Select item 136464	NM_005765.3(ATP6AP2):c.-35G>C	ATP6AP2	Single nucleotide variant (5 prime UTR variant)	not specified	GBenign
Select item 2027922	NM_005765.3(ATP6AP2):c.6T>A (p.Ala2=)	ATP6AP2, LOC130068149	Single nucleotide variant (synonymous variant)	Syndromic X-linked intellectual disability Hedera type	GLikely benign
Select item 204914	NM_005765.3(ATP6AP2):c.19C>T (p.Leu7Phe)	ATP6AP2, LOC130068149 (L7F)	Single nucleotide variant (missense variant)	Syndromic X-linked intellectual disability Hedera type +1 more	GConflicting classifications of pathogenicity
Select item 1010312	NM_005765.3(ATP6AP2):c.33G>A (p.Val11=)	ATP6AP2, LOC130068149	Single nucleotide variant (synonymous variant)	Syndromic X-linked intellectual disability Hedera type	GUncertain significance
Select item 2729746	NM_005765.3(ATP6AP2):c.35C>T (p.Ala12Val)	ATP6AP2, LOC130068149 (A12V)	Single nucleotide variant (missense variant)	Syndromic X-linked intellectual disability Hedera type	GUncertain significance
Select item 2756836	NM_005765.3(ATP6AP2):c.37+5G>A	ATP6AP2, LOC130068149	Single nucleotide variant (intron variant)	Syndromic X-linked intellectual disability Hedera type	GUncertain significance
Select item 1603981	NM_005765.3(ATP6AP2):c.37+12G>A	ATP6AP2, LOC130068149	Single nucleotide variant (intron variant)	Syndromic X-linked intellectual disability Hedera type	GLikely benign
Select item 2106655	NM_005765.3(ATP6AP2):c.37+15G>A	ATP6AP2, LOC130068149	Single nucleotide variant (intron variant)	Syndromic X-linked intellectual disability Hedera type	GLikely benign
Select item 1998069	NM_005765.3(ATP6AP2):c.37+17C>G	ATP6AP2, LOC130068149	Single nucleotide variant (intron variant)	Syndromic X-linked intellectual disability Hedera type	GLikely benign
Select item 2739477	NM_005765.3(ATP6AP2):c.37+18G>A	ATP6AP2, LOC130068149	Single nucleotide variant (intron variant)	Syndromic X-linked intellectual disability Hedera type	GLikely benign
Select item 668777	NM_005765.3(ATP6AP2):c.38-281TTTG[3]	ATP6AP2	Microsatellite (intron variant)	not provided	GBenign
Select item 677623	NM_005765.3(ATP6AP2):c.38-104G>A	ATP6AP2	Single nucleotide variant (intron variant)	not provided	GLikely benign
Select item 1639741	NM_005765.3(ATP6AP2):c.38-13G>A	ATP6AP2	Single nucleotide variant (intron variant)	Syndromic X-linked intellectual disability Hedera type	GLikely benign
Select item 3340729	NM_005765.3(ATP6AP2):c.38-8C>G	ATP6AP2	Single nucleotide variant (intron variant)	not provided	GUncertain significance
Select item 136465	NM_005765.3(ATP6AP2):c.38-5T>C	ATP6AP2	Single nucleotide variant (intron variant)	Syndromic X-linked intellectual disability Hedera type +4 more	GBenign/Likely benign
Select item 1519106	NM_005765.3(ATP6AP2):c.47G>A (p.Gly16Glu)	ATP6AP2 (G16E)	Single nucleotide variant (missense variant)	Syndromic X-linked intellectual disability Hedera type	GUncertain significance
Select item 862603	NM_005765.3(ATP6AP2):c.50A>G (p.Asn17Ser)	ATP6AP2 (N17S)	Single nucleotide variant (missense variant)	Syndromic X-linked intellectual disability Hedera type +1 more	GUncertain significance
Select item 1653981	NM_005765.3(ATP6AP2):c.51C>T (p.Asn17=)	ATP6AP2	Single nucleotide variant (synonymous variant)	Syndromic X-linked intellectual disability Hedera type +1 more	GLikely benign
Select item 2526286	NM_005765.3(ATP6AP2):c.52G>A (p.Glu18Lys)	ATP6AP2 (E18K)	Single nucleotide variant (missense variant)	Inborn genetic diseases	GUncertain significance

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