Converted during submission to Uncertain significance.
ClinVar Genomic variation as it relates to human health
NM_001346252.4(USP28):c.571C>T (p.Leu191Phe)
Germline
Classification
Help
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
(1)
Help
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
Uncertain significance
1
no assertion criteria provided
Somatic
No data submitted for somatic clinical impact
Somatic
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_001346252.4(USP28):c.571C>T (p.Leu191Phe)
Variation ID: 161740 Accession: VCV000161740.2
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 11q23.2 11: 113834299 (GRCh38) [ NCBI UCSC ] 11: 113705021 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Dec 15, 2014 Dec 15, 2014 - HGVS
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... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_001346252.4:c.571C>T MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_001333181.1:p.Leu191Phe missense NM_001301029.2:c.196C>T NP_001287958.1:p.Leu66Phe missense NM_001346253.2:c.493C>T NP_001333182.1:p.Leu165Phe missense NM_001346254.2:c.571C>T NP_001333183.1:p.Leu191Phe missense NM_001346255.2:c.562C>T NP_001333184.1:p.Leu188Phe missense NM_001346257.2:c.493C>T NP_001333186.1:p.Leu165Phe missense NM_001346258.2:c.571C>T NP_001333187.1:p.Leu191Phe missense NM_001346259.2:c.493C>T NP_001333188.1:p.Leu165Phe missense NM_001346260.2:c.196C>T NP_001333189.1:p.Leu66Phe missense NM_001346261.2:c.196C>T NP_001333190.1:p.Leu66Phe missense NM_001346262.2:c.196C>T NP_001333191.1:p.Leu66Phe missense NM_001346263.2:c.-217C>T 5 prime UTR NM_001346264.2:c.-278C>T 5 prime UTR NM_001346265.2:c.-563C>T 5 prime UTR NM_001346267.2:c.-278C>T 5 prime UTR NM_001346268.2:c.-278C>T 5 prime UTR NM_001346269.2:c.-563C>T 5 prime UTR NM_001346270.2:c.-563C>T 5 prime UTR NM_001346271.2:c.-563C>T 5 prime UTR NM_001346272.2:c.-566C>T 5 prime UTR NM_001346273.2:c.571C>T NP_001333202.1:p.Leu191Phe missense NM_001400784.1:c.493C>T NP_001387713.1:p.Leu165Phe missense NM_001400785.1:c.571C>T NP_001387714.1:p.Leu191Phe missense NM_001400786.1:c.571C>T NP_001387715.1:p.Leu191Phe missense NM_001400787.1:c.571C>T NP_001387716.1:p.Leu191Phe missense NM_001400788.1:c.457-742C>T intron variant NM_001400789.1:c.493C>T NP_001387718.1:p.Leu165Phe missense NM_001400790.1:c.535-742C>T intron variant NM_001400791.1:c.535-742C>T intron variant NM_001400792.1:c.571C>T NP_001387721.1:p.Leu191Phe missense NM_001400793.1:c.493C>T NP_001387722.1:p.Leu165Phe missense NM_001400794.1:c.493C>T NP_001387723.1:p.Leu165Phe missense NM_001400795.1:c.562C>T NP_001387724.1:p.Leu188Phe missense NM_001400796.1:c.562C>T NP_001387725.1:p.Leu188Phe missense NM_001400797.1:c.562C>T NP_001387726.1:p.Leu188Phe missense NM_001400799.1:c.196C>T NP_001387728.1:p.Leu66Phe missense NM_001400800.1:c.160-742C>T intron variant NM_001400801.1:c.-227-742C>T intron variant NM_001400802.1:c.-278C>T 5 prime UTR NM_001400803.1:c.-217C>T 5 prime UTR NM_001400804.1:c.-217C>T 5 prime UTR NM_001400805.1:c.-66C>T 5 prime UTR NM_001400806.1:c.-563C>T 5 prime UTR NM_001400807.1:c.160-742C>T intron variant NM_001400809.1:c.160-742C>T intron variant NM_001400810.1:c.196C>T NP_001387739.1:p.Leu66Phe missense NM_001400811.1:c.-227-742C>T intron variant NM_001400812.1:c.-873C>T 5 prime UTR NM_001400813.1:c.-217C>T 5 prime UTR NM_020886.4:c.571C>T NP_065937.1:p.Leu191Phe missense NR_174609.1:n.763C>T non-coding transcript variant NC_000011.10:g.113834299G>A NC_000011.9:g.113705021G>A NG_051668.1:g.46272C>T - Protein change
- L191F, L66F, L165F, L188F
- Other names
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- Canonical SPDI
- NC_000011.10:113834298:G:A
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
|---|---|---|---|---|---|---|
| HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
|||
| USP28 | - | - |
GRCh38 GRCh37 |
60 | 80 | |
Conditions - Germline
| Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
|---|---|---|---|---|
| Uncertain significance (1) |
no assertion criteria provided
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- | RCV000149276.5 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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|---|---|---|---|---|---|
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Unknown
(-)
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no assertion criteria provided
Method: not provided
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Malignant tumor of prostate
Affected status: not provided
Allele origin:
somatic
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Science for Life laboratory, Karolinska Institutet
Accession: SCV000088918.1
First in ClinVar: Dec 15, 2014 Last updated: Dec 15, 2014
Comment:
TumorID:SWE-15
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Comment:
Converted during submission to Uncertain significance.
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Comment:
Germline Functional Evidence
| There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Comment:
Converted during submission to Uncertain significance.
Citations for germline classification of this variant
Help| Title | Author | Journal | Year | Link |
|---|---|---|---|---|
| The mitochondrial and autosomal mutation landscapes of prostate cancer. | Lindberg J | European urology | 2013 | PMID: 23265383 |
Text-mined citations for rs193920846 ...
HelpThese citations are identified by LitVar using
the rs number, so they may include citations for more than one variant
at this location. Please review the LitVar results carefully for your
variant of interest.
Record last updated Jun 17, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.