ClinVar Genomic variation as it relates to human health
NM_021625.5(TRPV4):c.806G>A (p.Arg269His)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_021625.5(TRPV4):c.806G>A (p.Arg269His)
Variation ID: 5000 Accession: VCV000005000.62
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 12q24.11 12: 109800665 (GRCh38) [ NCBI UCSC ] 12: 110238470 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Oct 5, 2015 Oct 20, 2024 Jun 11, 2024 - HGVS
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Nucleotide Protein Molecular
consequenceNM_021625.5:c.806G>A MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_067638.3:p.Arg269His missense NM_001177428.1:c.713-1753G>A intron variant NM_001177431.1:c.704G>A NP_001170902.1:p.Arg235His missense NM_001177433.1:c.713-1753G>A intron variant NM_147204.2:c.806G>A NP_671737.1:p.Arg269His missense NC_000012.12:g.109800665C>T NC_000012.11:g.110238470C>T NG_017090.1:g.37743G>A LRG_372:g.37743G>A LRG_372t1:c.806G>A LRG_372p1:p.Arg269His Q9HBA0:p.Arg269His - Protein change
- R269H, R235H
- Other names
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NM_021625.5(TRPV4):c.806G>A
- Canonical SPDI
- NC_000012.12:109800664:C:T
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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Trans-Omics for Precision Medicine (TOPMed) 0.00000
- Links
Genes
Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
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HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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TRPV4 | - | - |
GRCh38 GRCh37 |
1138 | 1153 |
Conditions - Germline
Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
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Pathogenic (4) |
criteria provided, single submitter
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Jan 3, 2022 | RCV000005292.16 | |
Pathogenic/Likely pathogenic (5) |
criteria provided, multiple submitters, no conflicts
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Oct 31, 2022 | RCV000005293.28 | |
Pathogenic (1) |
criteria provided, single submitter
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- | RCV000192243.11 | |
not provided (1) |
no classification provided
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- | RCV000202467.10 | |
Pathogenic (3) |
criteria provided, multiple submitters, no conflicts
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Jun 11, 2024 | RCV000235740.35 | |
Pathogenic (1) |
criteria provided, single submitter
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Jun 20, 2016 | RCV000623703.10 | |
Pathogenic (1) |
criteria provided, single submitter
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Oct 31, 2018 | RCV000763296.10 | |
Pathogenic (2) |
criteria provided, multiple submitters, no conflicts
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Mar 12, 2024 | RCV003320352.12 |
Submissions - Germline
Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Pathogenic
(Oct 31, 2018)
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criteria provided, single submitter
Method: clinical testing
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Brachyrachia (short spine dysplasia)
Metatropic dysplasia Parastremmatic dwarfism Scapuloperoneal spinal muscular atrophy Spondyloepimetaphyseal dysplasia, Maroteaux type Spondylometaphyseal dysplasia, Kozlowski type Neuronopathy, distal hereditary motor, autosomal dominant 8 Charcot-Marie-Tooth disease axonal type 2C Familial digital arthropathy-brachydactyly Sodium serum level quantitative trait locus 1 Avascular necrosis of femoral head, primary, 2
Affected status: unknown
Allele origin:
unknown
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Fulgent Genetics, Fulgent Genetics
Accession: SCV000893960.1
First in ClinVar: Mar 31, 2019 Last updated: Mar 31, 2019 |
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Pathogenic
(-)
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criteria provided, single submitter
Method: clinical testing
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Charcot-Marie-Tooth disease
Affected status: yes
Allele origin:
germline
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Molecular Genetics Laboratory, London Health Sciences Centre
Accession: SCV001335961.1
First in ClinVar: Jun 15, 2020 Last updated: Jun 15, 2020 |
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Pathogenic
(Jan 03, 2022)
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criteria provided, single submitter
Method: clinical testing
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Neuronopathy, distal hereditary motor, autosomal dominant 8
Affected status: yes
Allele origin:
germline
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3billion
Accession: SCV002059021.1
First in ClinVar: Jan 15, 2022 Last updated: Jan 15, 2022 |
Comment:
Same nucleotide change resulting in same amino acid change has been previously reported as pathogenic/likely pathogenic with strong evidence (ClinVar ID: VCV000005000, PMID:20037586, PS1_S). Functional … (more)
Same nucleotide change resulting in same amino acid change has been previously reported as pathogenic/likely pathogenic with strong evidence (ClinVar ID: VCV000005000, PMID:20037586, PS1_S). Functional studies provide strong evidence of the variant having a damaging effect on the gene or gene product (PMID: 20037587, 25256292, 20037588, 21454511, 21288981, 20037586, PS3_S). A different missense change at the same codon has been reported to be associated with TRPV4 related disorder (ClinVar ID: VCV000005002, PMID:20037586, PM5_P). A missense variant is a common mechanism associated with Neuronopathy (PP2_P). It is not observed in the gnomAD v2.1.1 dataset (PM2_M). The variant has been previously reported as de novo in a similarly affected individual (PMID: 24789864, PS2_S). Therefore, this variant is classified as pathogenic according to the recommendation of ACMG/AMP guideline. (less)
Clinical Features:
Thumbs, congenital Clasped (present) , Arthrogryposis multiplex congenita (present) , Decreased fetal movement (present) , Elbow flexion contracture (present) , Generalized hypotonia (present) , Hip … (more)
Thumbs, congenital Clasped (present) , Arthrogryposis multiplex congenita (present) , Decreased fetal movement (present) , Elbow flexion contracture (present) , Generalized hypotonia (present) , Hip contracture (present) , Fetal growth restriction (present) , Knee flexion contracture (present) , Trismus (present) , Muscle weakness (present) , Overlapping fingers (present) , Plantar flexion contracture (present) , Respiratory insufficiency (present) , Small for gestational age (present) , Tongue fasciculations (present) , Unilateral microphthalmos (present) , Wrist flexion contracture (present) (less)
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Pathogenic
(Sep 21, 2015)
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criteria provided, single submitter
Method: clinical testing
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Charcot-Marie-Tooth disease type 2C
(Autosomal dominant inheritance)
Affected status: unknown
Allele origin:
germline
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Athena Diagnostics
Accession: SCV000255846.2
First in ClinVar: Oct 19, 2015 Last updated: Oct 19, 2015 |
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Likely pathogenic
(Jun 23, 2016)
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criteria provided, single submitter
Method: clinical testing
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Charcot-Marie-Tooth disease axonal type 2C
Affected status: yes
Allele origin:
unknown
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Molecular Diagnostics Lab, Nemours Children's Health, Delaware
Accession: SCV000590830.1
First in ClinVar: Mar 08, 2017 Last updated: Mar 08, 2017 |
Clinical Features:
lifelong axonal polyneuropathy (present) , scoliosis (present) , club feet (present) , vocal cord paralysis (present)
Age: 60-69 years
Sex: male
Comment on evidence:
positive family history
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Pathogenic
(Apr 27, 2019)
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criteria provided, single submitter
Method: clinical testing
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Not provided
Affected status: unknown
Allele origin:
germline
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Mayo Clinic Laboratories, Mayo Clinic
Accession: SCV001714417.1
First in ClinVar: Jun 15, 2021 Last updated: Jun 15, 2021 |
Comment:
PS3, PS4_moderate, PM1, PM2, PM6, PP1, PP5
Number of individuals with the variant: 1
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Pathogenic
(Jun 20, 2016)
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criteria provided, single submitter
Method: clinical testing
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Inborn genetic diseases
Affected status: yes
Allele origin:
germline
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Ambry Genetics
Accession: SCV000741621.3
First in ClinVar: Apr 15, 2018 Last updated: Jan 07, 2023 |
Number of individuals with the variant: 1
Clinical Features:
Dolichocephaly (present) , Metopic synostosis (present) , Abnormality of the fontanelles or cranial sutures (present) , Sensorineural hearing loss (present) , Atresia of the external … (more)
Dolichocephaly (present) , Metopic synostosis (present) , Abnormality of the fontanelles or cranial sutures (present) , Sensorineural hearing loss (present) , Atresia of the external auditory canal (present) , Esophageal atresia (present) , Chronic lung disease (present) , Obstructive sleep apnea syndrome (present) , Imperforate anus (present) , Duodenal atresia (disease) (present) , Growth delay (present) , Pelvic kidney (present) , Renal agenesis (present) , Hypospadias, penile (present) , Cryptorchidism (present) , Kyphoscoliosis (present) , Abnormal vertebral morphology (present) , Pectus carinatum (present) , Clubfoot (present) , Flexion contracture (present) , Camptodactyly (present) , Patellar hypoplasia (present) , Limb undergrowth (present) , Tethered cord (present) , Neurogenic bladder (present) , Seizures (present) , Delayed speech and language development (present) , Posteriorly rotated ears (present) , Narrow palate (present) , Dental crowding (present) , Clinodactyly of the 5th finger (present) , Coarctation of aorta (present) , Polyhydramnios (present) , Cerebral palsy (present) (less)
Sex: male
Ethnicity/Population group: Caucasian
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Pathogenic
(Apr 17, 2022)
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criteria provided, single submitter
Method: clinical testing
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Charcot-Marie-Tooth disease axonal type 2C
Affected status: unknown
Allele origin:
unknown
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Baylor Genetics
Accession: SCV003836441.1
First in ClinVar: Mar 11, 2023 Last updated: Mar 11, 2023 |
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Pathogenic
(Jul 01, 2023)
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criteria provided, single submitter
Method: research
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TRPV4-related bone disorder
Affected status: yes
Allele origin:
germline
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Division of Human Genetics, National Health Laboratory Service/University of the Witwatersrand
Accession: SCV004024495.2
First in ClinVar: Aug 19, 2023 Last updated: Nov 11, 2023 |
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Pathogenic
(Oct 31, 2022)
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criteria provided, single submitter
Method: clinical testing
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Charcot-Marie-Tooth disease axonal type 2C
Affected status: unknown
Allele origin:
germline
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Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV000253931.10
First in ClinVar: Oct 11, 2015 Last updated: Feb 20, 2024 |
Comment:
For these reasons, this variant has been classified as Pathogenic. This variant disrupts the p.Arg269 amino acid residue in TRPV4. Other variant(s) that disrupt this … (more)
For these reasons, this variant has been classified as Pathogenic. This variant disrupts the p.Arg269 amino acid residue in TRPV4. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 21336783, 25900305, 26110311). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Experimental studies have shown that this missense change affects TRPV4 function (PMID: 20037586, 20037588, 21288981, 21454511, 25256292). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt TRPV4 protein function. ClinVar contains an entry for this variant (Variation ID: 5000). This missense change has been observed in individuals with a range of neurological disorders including scapuloperoneal spinal muscular atrophy and CMT (PMID: 20037587, 20460441, 24575025, 24789864). It has also been observed to segregate with disease in related individuals. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces arginine, which is basic and polar, with histidine, which is basic and polar, at codon 269 of the TRPV4 protein (p.Arg269His). (less)
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Pathogenic
(Mar 12, 2024)
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criteria provided, single submitter
Method: curation
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TRPV4-related bone disorder
(Autosomal dominant inheritance)
Affected status: unknown
Allele origin:
germline
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Broad Center for Mendelian Genomics, Broad Institute of MIT and Harvard
Accession: SCV004800957.1
First in ClinVar: Mar 16, 2024 Last updated: Mar 16, 2024 |
Comment:
The heterozygous p.Arg269His variant in TRPV4 was identified by our study in one individual whose features included congenital fibrosis of the extraocular muscles of the … (more)
The heterozygous p.Arg269His variant in TRPV4 was identified by our study in one individual whose features included congenital fibrosis of the extraocular muscles of the right eye, abducens palsy of the left eye, motor axonal neuropathy, and arthrogryposis, via a collaborative study between the Broad Institute's Center for Mendelian Genomics and the Engle lab (https://kirbyneuro.org/EngleLab/). Trio genome analysis showed this variant to be de novo. We believe this is a possible phenotype expansion for TRPV4-related disease The p.Arg269His variant in TRPV4 has been previously reported in over 10 unrelated individuals with autosomal dominant TRPV4-related disease (PMID: 20037586, PMID: 27751652, PMID: 26948711, PMID: 30230566, PMID: 20037588, PMID: 20037587, PMID: 20460441, PMID: 24575025, PMID: 24789864) and segregated with disease in 59 affected relatives from 7 families (PMID: 20037586, PMID: 26948711, PMID: 30230566, PMID: 20037588, PMID: 20037587, PMID: 20460441, PMID: 24575025). The number of reported affected individuals with this variant is greater than expected compared to non-affected individuals with this variant. This variant was found to be de novo in at least two unrelated individuals with confirmed maternity and paternity (PMID: 24789864, PMID: 30230566). This variant has also been reported in ClinVar (Variation ID: 5000) and has been interpreted as pathogenic by multiple submitters. This variant was absent from large population studies. In vitro functional studies provide some evidence that the p.Arg269His variant may impact protein function (PMID: 21454511, PMID: 21288981, PMID: 20037588, PMID: 20037586). However, these types of assays may not accurately represent biological function. 2 additional pathogenic or likely pathogenic variants, resulting in a different amino acid change at the same position, p.Arg269Ser and p.Arg269Cys, have been reported in association with disease in the literature and in ClinVar, slightly supporting that a change at this position may not be tolerated (PMID: 20037586, 21336783, 24789864, 25900305, 26110311; Variation ID: 536867, 5002). Computational prediction tools and conservation analyses do not provide strong support for or against an impact to the protein.In summary, this variant meets criteria to be classified as pathogenic for autosomal dominant TRPV4-related disease. ACMG/AMP Criteria applied: PS2_Moderate, PS3, PS4, PM2_Supporting, PM5_Supporting, PP1_strong (Richards 2015). (less)
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Pathogenic
(Jun 11, 2024)
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criteria provided, single submitter
Method: clinical testing
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Not Provided
Affected status: yes
Allele origin:
germline
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GeneDx
Accession: SCV000293511.13
First in ClinVar: Jul 24, 2016 Last updated: Sep 16, 2024 |
Comment:
Several published functional studies have demonstrated the R269H variant leads to disease by a gain-of-function mechanism (PMID: 20037586, 20037587, 20037588, 21454511); Not observed at significant … (more)
Several published functional studies have demonstrated the R269H variant leads to disease by a gain-of-function mechanism (PMID: 20037586, 20037587, 20037588, 21454511); Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis indicates that this missense variant does not alter protein structure/function; This variant is associated with the following publications: (PMID: 22702953, 21454511, 33060286, 31468327, 24963089, 24575025, 20037587, 20037588, 23306656, 26948711, 27751652, 30373780, 30230566, 29858556, 31230720, 32400062, 37366078, 36964972, 24789864, 20037586, 21336783) (less)
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Pathogenic
(Nov 01, 2020)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: yes
Allele origin:
germline
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CeGaT Center for Human Genetics Tuebingen
Accession: SCV001501438.23
First in ClinVar: Mar 14, 2021 Last updated: Oct 20, 2024 |
Number of individuals with the variant: 1
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Pathogenic
(Apr 25, 2018)
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no assertion criteria provided
Method: clinical testing
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Neuronopathy, distal hereditary motor, autosomal dominant 8
Affected status: yes
Allele origin:
germline
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Institute of Human Genetics, Cologne University
Accession: SCV000787763.1
First in ClinVar: Mar 08, 2017 Last updated: Mar 08, 2017 |
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Uncertain significance
(-)
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no assertion criteria provided
Method: research
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Neuronopathy, distal hereditary motor, autosomal dominant 8
This variant was identified in an
(more...)
(Autosomal dominant inheritance)
Affected status: yes
Allele origin:
de novo
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Lupski Lab, Baylor-Hopkins CMG, Baylor College of Medicine
Accession: SCV001167535.1
First in ClinVar: Mar 16, 2020 Last updated: Mar 16, 2020 |
Number of individuals with the variant: 1
Family history: yes
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Pathogenic
(Mar 08, 2011)
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no assertion criteria provided
Method: literature only
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HEREDITARY MOTOR AND SENSORY NEUROPATHY, TYPE IIC
Affected status: not provided
Allele origin:
germline
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OMIM
Accession: SCV000025471.5
First in ClinVar: Apr 04, 2013 Last updated: Oct 21, 2023 |
Comment on evidence:
Distal Hereditary Motor Neuropathy 8, Autosomal Dominant In affected members of a large family in which 20 individuals had autosomal dominant distal hereditary motor neuropathy-8 … (more)
Distal Hereditary Motor Neuropathy 8, Autosomal Dominant In affected members of a large family in which 20 individuals had autosomal dominant distal hereditary motor neuropathy-8 (HMND8; 600175), Auer-Grumbach et al. (2010) identified a heterozygous c.806G-A transition in exon 5 of the TRPV4 gene, resulting in an arg269-to-his (R269H) substitution. The family had originally been reported by Fleury and Hageman (1985). The mutation was not found in 162 European control individuals. The mutation occurred at the outer helices of the ANK4 and ANK5 domains. In vitro functional expression studies in HeLa cells showed that the mutant protein formed cytoplasmic aggregates and had significantly reduced surface expression. In cotransfection studies, both mutant and wildtype proteins were detected in cytoplasmic aggregates. Mutant TRPV4 cells showed an impaired response to stimulus-dependent channel activity. The studies suggested that the mutation interferes with normal channel trafficking and function, which the authors predicted would result in haploinsufficiency. Hereditary Motor and Sensory Neuropathy Type IIC In affected members of the family with hereditary motor and sensory neuropathy type IIC (HMSN2C; 606071) reported by Dyck et al. (1994), Deng et al. (2010) and Landoure et al. (2010) independently identified a heterozygous R269H mutation in the TRPV4 gene. Deng et al. (2010) did not find the mutation in over 700 control samples. Studies in transiently transfected HEK293 cells showed that the mutant protein was expressed at the plasma membrane, suggesting no defect in channel assembly or intracellular trafficking. Functional studies suggested that the mutation resulted in increased constitutive calcium channel activity, both under basal conditions and in response to stimuli, compared to wildtype. Deng et al. (2010) postulated a gain-of-function mechanism. The studies of Landoure et al. (2010) showed that the mutant protein caused cell death in cultured neuronal cells and in HEK293 cells, where cell death was associated with increased intracellular calcium. Further studies in Xenopus oocytes showed that the mutant channel was expressed normally at the cell surface and had increased current activity compared to wildtype. Mutant TRPV4 expressed in HeLa and HEK293 cells showed similar spatial distributions of the channel at the plasma membrane. Another pathogenic mutation was identified in this same codon (R269C; 605427.0011). Variant Function Commenting on the divergent functional findings of Auer-Grumbach et al. (2010) and Deng et al. (2010) and Landoure et al. (2010), Nilius and Owsianik (2010) suggested that the discrepancies were related to differences in experimental protocols. By in vitro functional expression studies, Klein et al. (2011) showed that the mutant R269H protein caused increased agonist-induced channel activity and increased basal intracellular calcium concentrations in HEK293 cells compared to wildtype. HeLa cells expressing the mutant protein showed increased cell death, which could be suppressed by the TRPV antagonist ruthenium red. The findings were consistent with a pathogenic gain of function. (less)
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Pathogenic
(Mar 08, 2011)
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no assertion criteria provided
Method: literature only
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NEURONOPATHY, DISTAL HEREDITARY MOTOR, AUTOSOMAL DOMINANT 8
Affected status: not provided
Allele origin:
germline
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OMIM
Accession: SCV000025470.5
First in ClinVar: Apr 04, 2013 Last updated: Oct 21, 2023 |
Comment on evidence:
Distal Hereditary Motor Neuropathy 8, Autosomal Dominant In affected members of a large family in which 20 individuals had autosomal dominant distal hereditary motor neuropathy-8 … (more)
Distal Hereditary Motor Neuropathy 8, Autosomal Dominant In affected members of a large family in which 20 individuals had autosomal dominant distal hereditary motor neuropathy-8 (HMND8; 600175), Auer-Grumbach et al. (2010) identified a heterozygous c.806G-A transition in exon 5 of the TRPV4 gene, resulting in an arg269-to-his (R269H) substitution. The family had originally been reported by Fleury and Hageman (1985). The mutation was not found in 162 European control individuals. The mutation occurred at the outer helices of the ANK4 and ANK5 domains. In vitro functional expression studies in HeLa cells showed that the mutant protein formed cytoplasmic aggregates and had significantly reduced surface expression. In cotransfection studies, both mutant and wildtype proteins were detected in cytoplasmic aggregates. Mutant TRPV4 cells showed an impaired response to stimulus-dependent channel activity. The studies suggested that the mutation interferes with normal channel trafficking and function, which the authors predicted would result in haploinsufficiency. Hereditary Motor and Sensory Neuropathy Type IIC In affected members of the family with hereditary motor and sensory neuropathy type IIC (HMSN2C; 606071) reported by Dyck et al. (1994), Deng et al. (2010) and Landoure et al. (2010) independently identified a heterozygous R269H mutation in the TRPV4 gene. Deng et al. (2010) did not find the mutation in over 700 control samples. Studies in transiently transfected HEK293 cells showed that the mutant protein was expressed at the plasma membrane, suggesting no defect in channel assembly or intracellular trafficking. Functional studies suggested that the mutation resulted in increased constitutive calcium channel activity, both under basal conditions and in response to stimuli, compared to wildtype. Deng et al. (2010) postulated a gain-of-function mechanism. The studies of Landoure et al. (2010) showed that the mutant protein caused cell death in cultured neuronal cells and in HEK293 cells, where cell death was associated with increased intracellular calcium. Further studies in Xenopus oocytes showed that the mutant channel was expressed normally at the cell surface and had increased current activity compared to wildtype. Mutant TRPV4 expressed in HeLa and HEK293 cells showed similar spatial distributions of the channel at the plasma membrane. Another pathogenic mutation was identified in this same codon (R269C; 605427.0011). Variant Function Commenting on the divergent functional findings of Auer-Grumbach et al. (2010) and Deng et al. (2010) and Landoure et al. (2010), Nilius and Owsianik (2010) suggested that the discrepancies were related to differences in experimental protocols. By in vitro functional expression studies, Klein et al. (2011) showed that the mutant R269H protein caused increased agonist-induced channel activity and increased basal intracellular calcium concentrations in HEK293 cells compared to wildtype. HeLa cells expressing the mutant protein showed increased cell death, which could be suppressed by the TRPV antagonist ruthenium red. The findings were consistent with a pathogenic gain of function. (less)
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not provided
(-)
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no classification provided
Method: literature only
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Neuromuscular disease
Affected status: yes
Allele origin:
germline
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GeneReviews
Accession: SCV000148057.2
First in ClinVar: Dec 21, 2015 Last updated: Oct 01, 2022 |
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Germline Functional Evidence
There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
HelpTitle | Author | Journal | Year | Link |
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Expanding the genetics and phenotypes of ocular congenital cranial dysinnervation disorders. | Jurgens JA | Genetics in medicine : official journal of the American College of Medical Genetics | 2024 | PMID: 39033378 |
Autosomal Dominant TRPV4 Disorders. | Adam MP | - | 2020 | PMID: 24830047 |
The remarkable phenotypic variability of the p.Arg269HiS variant in the TRPV4 gene. | Jędrzejowska M | Muscle & nerve | 2019 | PMID: 30230566 |
Molecular diagnosis of inherited peripheral neuropathies by targeted next-generation sequencing: molecular spectrum delineation. | Bacquet J | BMJ open | 2018 | PMID: 30373780 |
Targeted sequencing with expanded gene profile enables high diagnostic yield in non-5q-spinal muscular atrophies. | Karakaya M | Human mutation | 2018 | PMID: 29858556 |
A case of congenital spinal muscular atrophy with pain due to a mutation in TRPV4. | Fleming J | Neuromuscular disorders : NMD | 2016 | PMID: 27751652 |
TRPV4 related scapuloperoneal spinal muscular atrophy: Report of an Italian family and review of the literature. | Biasini F | Neuromuscular disorders : NMD | 2016 | PMID: 26948711 |
Long-Term Observations in an Affected Family with Neurogenic Scapuloperoneal Syndrome Caused by Mutation R269C in the TRPV4 Gene. | Vill K | Neuropediatrics | 2015 | PMID: 26110311 |
Phenotypic variability of TRPV4 related neuropathies. | Evangelista T | Neuromuscular disorders : NMD | 2015 | PMID: 25900305 |
TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P₂. | Takahashi N | Nature communications | 2014 | PMID: 25256292 |
Intrafamilial variable hearing loss in TRPV4 induced spinal muscular atrophy. | Oonk AM | The Annals of otology, rhinology, and laryngology | 2014 | PMID: 24963089 |
Phenotypic spectrum and incidence of TRPV4 mutations in patients with inherited axonal neuropathy. | Echaniz-Laguna A | Neurology | 2014 | PMID: 24789864 |
Essential Tremor in a Charcot-Marie-Tooth Type 2C Kindred Does Not Segregate with the TRPV4 R269H Mutation. | Louis ED | Case reports in neurology | 2014 | PMID: 24575025 |
Structural and biochemical consequences of disease-causing mutations in the ankyrin repeat domain of the human TRPV4 channel. | Inada H | Biochemistry | 2012 | PMID: 22702953 |
Mutant TRPV4-mediated toxicity is linked to increased constitutive function in axonal neuropathies. | Fecto F | The Journal of biological chemistry | 2011 | PMID: 21454511 |
Reduced penetrance in hereditary motor neuropathy caused by TRPV4 Arg269Cys mutation. | Berciano J | Journal of neurology | 2011 | PMID: 21336783 |
TRPV4 mutations and cytotoxic hypercalcemia in axonal Charcot-Marie-Tooth neuropathies. | Klein CJ | Neurology | 2011 | PMID: 21288981 |
Dominant mutations in the cation channel gene transient receptor potential vanilloid 4 cause an unusual spectrum of neuropathies. | Zimoń M | Brain : a journal of neurology | 2010 | PMID: 20460441 |
Channelopathies converge on TRPV4. | Nilius B | Nature genetics | 2010 | PMID: 20104247 |
Alterations in the ankyrin domain of TRPV4 cause congenital distal SMA, scapuloperoneal SMA and HMSN2C. | Auer-Grumbach M | Nature genetics | 2010 | PMID: 20037588 |
Scapuloperoneal spinal muscular atrophy and CMT2C are allelic disorders caused by alterations in TRPV4. | Deng HX | Nature genetics | 2010 | PMID: 20037587 |
Mutations in TRPV4 cause Charcot-Marie-Tooth disease type 2C. | Landouré G | Nature genetics | 2010 | PMID: 20037586 |
Hereditary motor and sensory neuropathy with diaphragm and vocal cord paresis. | Dyck PJ | Annals of neurology | 1994 | PMID: 8179305 |
A dominantly inherited lower motor neuron disorder presenting at birth with associated arthrogryposis. | Fleury P | Journal of neurology, neurosurgery, and psychiatry | 1985 | PMID: 4056805 |
https://erepo.clinicalgenome.org/evrepo/ui/interpretation/f2dbe2c7-c3cd-498d-b928-ab6d78809b1a | - | - | - | - |
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Text-mined citations for rs267607144 ...
HelpRecord last updated Nov 25, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.