| | LOC121848004, LOC121848005 +457 more | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Duplication (intron variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (intron variant) | Ocular cystinosis +3 more | |
| | | Single nucleotide variant (intron variant) | Nephropathic cystinosis +2 more | |
| | | Single nucleotide variant (nonsense +1 more) | not provided +4 more | |
| | | Single nucleotide variant (missense variant +1 more) | Nephropathic cystinosis +5 more | GPathogenic/Likely pathogenic |
| | CTNS, CTNS-AS1 (M148T +1 more) | Single nucleotide variant (missense variant +1 more) | not provided +1 more | GConflicting classifications of pathogenicity |
| | | Single nucleotide variant (intron variant) | not provided +2 more | |
| | | Single nucleotide variant (intron variant) | Nephropathic cystinosis +2 more | |
| | | Single nucleotide variant (intron variant) | Nephropathic cystinosis +2 more | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (synonymous variant) | Ocular cystinosis +5 more | |
| | CTNS, CTNS-AS1 (L158P +1 more) | Single nucleotide variant (missense variant) | Nephropathic cystinosis +5 more | GPathogenic/Likely pathogenic |
| | | Single nucleotide variant (synonymous variant) | not provided +5 more | |
| | CTNS, CTNS-AS1 (Y173fs +1 more) | Duplication (frameshift variant) | not provided | |
| | CTNS, CTNS-AS1 (D205N +1 more) | Single nucleotide variant (missense variant) | Nephropathic cystinosis +5 more | |
| | CTNS, CTNS-AS1 (Q222R +1 more) | Single nucleotide variant (missense variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Microsatellite (intron variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (intron variant) | not provided | |
| | | Single nucleotide variant (splice acceptor variant) | Nephropathic cystinosis +4 more | GPathogenic/Likely pathogenic |