| | NPHP3, NPHP3-ACAD11 +1 more | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +4 more | |
| | NPHP3, NPHP3-ACAD11 +1 more (E116K) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +3 more | |
| | NPHP3, NPHP3-ACAD11 +1 more (S111F) | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +3 more | |
| | NPHP3, NPHP3-ACAD11 +1 more (E108A) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +5 more | |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | LOC129937586, NPHP3 +2 more (G78V) | Single nucleotide variant (non-coding transcript variant +1 more) | Meckel-Gruber syndrome +6 more | |
| | LOC129937586, NPHP3 +2 more (K75R) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | LOC129937586, NPHP3 +2 more (L70P) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +4 more | |
| | LOC129937586, NPHP3 +2 more (G63E) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +4 more | |
| | LOC129937586, NPHP3 +2 more (R62H) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3-ACAD11, NPHP3-AS1 +2 more | Duplication (non-coding transcript variant +1 more) | not provided +4 more | |
| | LOC129937586, NPHP3 +2 more (G54E) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | LOC129937586, NPHP3 +2 more (A53del) | Microsatellite (non-coding transcript variant +1 more) | Nephronophthisis +4 more | |
| | LOC129937586, NPHP3 +2 more (A53G) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +4 more | |
| | NPHP3-ACAD11, NPHP3-AS1 +2 more (A52V) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | LOC129937586, NPHP3 +2 more (A49V) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +3 more | |
| | NPHP3-ACAD11, NPHP3-AS1 +2 more (R39L) | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related disorder +4 more | |
| | NPHP3, NPHP3-ACAD11 +2 more (E29D) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +5 more | |
| | LOC129937586, NPHP3 +2 more (E26K) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +3 more | |
| | NPHP3-AS1, LOC129937586 +2 more (A22V) | Single nucleotide variant (non-coding transcript variant +1 more) | not provided +5 more | |
| | NPHP3, NPHP3-ACAD11 +1 more (M1fs) | Duplication (non-coding transcript variant +2 more) | Nephronophthisis +3 more | |