ClinVar Genomic variation as it relates to human health
NM_006261.5(PROP1):c.301_302del (p.Leu102fs)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_006261.5(PROP1):c.301_302del (p.Leu102fs)
Variation ID: 8098 Accession: VCV000008098.38
- Type and length
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Microsatellite, 2 bp
- Location
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Cytogenetic: 5q35.3 5: 177994146-177994147 (GRCh38) [ NCBI UCSC ] 5: 177421147-177421148 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Apr 4, 2013 Nov 17, 2024 Aug 11, 2024 - HGVS
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Nucleotide Protein Molecular
consequenceNM_006261.5:c.301_302del MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_006252.4:p.Leu102fs frameshift NM_006261.5:c.301_302delAG MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
frameshift NM_006261.4:c.301_302delAG NC_000005.10:g.177994147TC[2] NC_000005.9:g.177421148TC[2] NG_015889.1:g.7092AG[2] - Protein change
- L102fs
- Other names
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296_297delGA
- Canonical SPDI
- NC_000005.10:177994145:CTCTCTC:CTCTC
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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- Links
Genes
Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
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HI score
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The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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PROP1 | - | - |
GRCh38 GRCh38 GRCh38 GRCh37 |
275 | 326 |
Conditions - Germline
Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
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Pathogenic/Likely pathogenic (13) |
criteria provided, multiple submitters, no conflicts
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Mar 27, 2024 | RCV000008566.31 | |
Pathogenic (1) |
criteria provided, single submitter
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Aug 18, 2011 | RCV000030379.3 | |
Pathogenic (5) |
criteria provided, multiple submitters, no conflicts
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Aug 11, 2024 | RCV000517269.17 | |
Pathogenic (1) |
criteria provided, single submitter
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Aug 1, 2020 | RCV002254517.2 | |
PROP1-related disorder
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Pathogenic (1) |
no assertion criteria provided
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Jun 5, 2024 | RCV004755724.1 |
Submissions - Germline
Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Pathogenic
(Aug 28, 2017)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: unknown
Allele origin:
germline
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Eurofins Ntd Llc (ga)
Accession: SCV000854930.1
First in ClinVar: Dec 19, 2017 Last updated: Dec 19, 2017 |
Number of individuals with the variant: 1
Sex: mixed
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Likely pathogenic
(Oct 08, 2020)
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criteria provided, single submitter
Method: clinical testing
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Pituitary hormone deficiency, combined, 2
Affected status: yes
Allele origin:
unknown
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Institute of Human Genetics, University of Leipzig Medical Center
Accession: SCV001934229.1
First in ClinVar: Sep 26, 2021 Last updated: Sep 26, 2021 |
Comment:
This variant was identified as compound heterozygous with NM_006261.4:c.358C>T.
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pathogenic
(Aug 18, 2011)
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criteria provided, single submitter
Method: curation, clinical testing
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Combined Pituitary Hormone Deficiency
(autosomal recessive)
Affected status: yes, unknown
Allele origin:
germline
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Women's Health and Genetics/Laboratory Corporation of America, LabCorp
Accession: SCV000053046.2
First in ClinVar: Apr 04, 2013 Last updated: Apr 07, 2022 |
Comment:
Converted during submission to Pathogenic.
Observation 1:
Number of individuals with the variant: 26
Observation 2:
Number of individuals with the variant: 21
Observation 3:
Tissue: Blood
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Pathogenic
(Jun 20, 2022)
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criteria provided, single submitter
Method: clinical testing
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Pituitary hormone deficiency, combined, 2
Affected status: unknown
Allele origin:
germline
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Revvity Omics, Revvity
Accession: SCV003826671.2
First in ClinVar: Mar 04, 2023 Last updated: Feb 04, 2024 |
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Pathogenic
(Jul 04, 2023)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: yes
Allele origin:
germline
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Clinical Genetics Laboratory, Skane University Hospital Lund
Accession: SCV005197096.1
First in ClinVar: Aug 25, 2024 Last updated: Aug 25, 2024 |
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Pathogenic
(Aug 11, 2024)
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criteria provided, single submitter
Method: clinical testing
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Not Provided
Affected status: yes
Allele origin:
germline
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GeneDx
Accession: SCV001167827.2
First in ClinVar: Mar 14, 2020 Last updated: Sep 16, 2024 |
Comment:
Frameshift variant predicted to result in abnormal protein length as the last 125 amino acids are replaced with 7 different amino acids, and other similar … (more)
Frameshift variant predicted to result in abnormal protein length as the last 125 amino acids are replaced with 7 different amino acids, and other similar variants have been reported in HGMD; Published functional studies demonstrate a damaging effect on DNA binding and transactivation function (PMID: 9462743); This variant is associated with the following publications: (PMID: 28734020, 12414875, 16984240, 17526936, 15472175, 10084575, 25581745, 30959475, 31948187, 31090814, 31093944, 32415500, 33098107, 11081182, 26111865, 10323394, 15126542, 10634415, 26059845, 17162714, 16735499, 16703408, 18157385, 11022176, 9462743, 11549674, 30266296, 34426522, 31589614, 32612575, 9745452) (less)
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Pathogenic
(May 04, 2022)
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criteria provided, single submitter
Method: clinical testing
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Pituitary hormone deficiency, combined, 2
(Autosomal recessive inheritance)
Affected status: yes
Allele origin:
germline
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Pittsburgh Clinical Genomics Laboratory, University of Pittsburgh Medical Center
Accession: SCV005397296.1
First in ClinVar: Nov 17, 2024 Last updated: Nov 17, 2024 |
Comment:
This sequence variant is a two nucleotide deletion (delAG) at position c.301_302 of the coding sequence in exon 2 of 3 in the PROP1 gene. … (more)
This sequence variant is a two nucleotide deletion (delAG) at position c.301_302 of the coding sequence in exon 2 of 3 in the PROP1 gene. The c.301_302del allele has multiple desigtions and may be referred to as A301G302, 296delAG, or GA296 in the literature. This deletion results a premature termition sigl 8 codons downstream of the frameshift introduced at codon 102. While this variant is not expected to undergo nonsense mediated decay, a premature termition at this position would elimite the PROP1 protein's D binding and transcriptiol activation domains which are crucial to this protein's role in regulating the growth of the pituitary gland (PMID: 15591534). This is a previously reported variant (ClinVar) and is one of the most common variants associated with combined pituitary hormone deficiency (PMID: 31090814, 27828722). This variant has been observed in both the homozygous and compound heterozygous states in numerous individuals with combined pituitary hormone deficiency (PMID: 9745452, 11081182, 10084575, 10323394, 9462743) and has been observed to co-segregate with combined pituitary hormone deficiency in multiple individuals across a six-generation pedigree (PMID: 10634415). This variant is observed in control population datasets (gnomAD database, 51 of 282,522 alleles, 0.02%). A functiol alysis of the protein generated by this variant has confirmed that D binding and transactivation is significantly reduced by the variant relative to the wildtype protein (PMID: 9462743). Given this information, we consider this a pathogenic variant. ACMG Criteria: PM3, PP1, PS3, PVS1 (less)
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Pathogenic
(Dec 11, 2012)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: unknown
Allele origin:
germline
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Athena Diagnostics
Accession: SCV000614793.1
First in ClinVar: Dec 19, 2017 Last updated: Dec 19, 2017 |
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Pathogenic
(Sep 13, 2017)
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criteria provided, single submitter
Method: clinical testing
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Pituitary hormone deficiency, combined, 2
Affected status: unknown
Allele origin:
germline
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Illumina Laboratory Services, Illumina
Accession: SCV000456757.3
First in ClinVar: Dec 06, 2016 Last updated: May 24, 2019 |
Comment:
The PROP1 c.301_302delAG (p.Leu102CysfsTer8) variant results in a frameshift and is predicted to result in premature termination of the protein and loss of the DNA-binding … (more)
The PROP1 c.301_302delAG (p.Leu102CysfsTer8) variant results in a frameshift and is predicted to result in premature termination of the protein and loss of the DNA-binding homeodomain and C-terminal transactivation domain (Wu et al. 1998). Across a selection of the available literature, the p.Leu102CysfsTer8 variant has been reported in a total of 280 individuals with combined pituitary hormone deficiency, including 213 homozygotes, 64 compound heterozygotes, and three heterozygotes in whom a second variant was not been identified (Wu et al. 1998; Cogan et al. 1998; Fofanova et al. 1998; Deladoey et al. 1999; Mendonca et al. 1999; Pernasetti et al. 2000; Riepe et al. 2001; Lee et al. 2004; Avbelj Stefanija et al. 2015; Lazea et al. 2015; Dusatkova et al. 2016). The p.Leu102CysfsTer8 variant was shown to segregate with disease in a four-generation family (Pernasetti et al. 2000). The variant was absent from 193 controls but is reported at a frequency of 0.00109 in the European American population of the Exome Sequencing Project. Based on the collective evidence and the potential impact of frameshift variants, the p.Leu102CysfsTer8 variant is classified as pathogenic for combined pituitary hormone deficiency. This variant was observed by ICSL as part of a predisposition screen in an ostensibly healthy population. (less)
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Pathogenic
(Nov 12, 2019)
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criteria provided, single submitter
Method: clinical testing
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Pituitary hormone deficiency, combined, 2
Affected status: unknown
Allele origin:
unknown
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Myriad Genetics, Inc.
Accession: SCV001194082.2
First in ClinVar: Apr 06, 2020 Last updated: Jul 03, 2020 |
Comment:
NM_006261.4(PROP1):c.301_302delAG(aka L102Cfs*8) is classified as pathogenic in the context of combined pituitary hormone deficiency, PROP1 related. Sources cited for classification include the following: PMID 9462743 … (more)
NM_006261.4(PROP1):c.301_302delAG(aka L102Cfs*8) is classified as pathogenic in the context of combined pituitary hormone deficiency, PROP1 related. Sources cited for classification include the following: PMID 9462743 and 15126542. Classification of NM_006261.4(PROP1):c.301_302delAG(aka L102Cfs*8) is based on the following criteria: The variant causes a premature termination codon that is expected to be targeted by nonsense-mediated mRNA decay and is reported in individuals with the relevant phenotype. Please note: this variant was assessed in the context of healthy population screening. (less)
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Pathogenic
(Aug 01, 2020)
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criteria provided, single submitter
Method: research
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46,XY partial gonadal dysgenesis
Affected status: yes
Allele origin:
maternal
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Laan Lab, Human Genetics Research Group, University of Tartu
Accession: SCV002525861.1
First in ClinVar: Jun 18, 2022 Last updated: Jun 18, 2022 |
Clinical Features:
Gonadal dysgenesis (present) , Bilateral cryptorchidism (present) , Penoscrotal hypospadias (present) , Decreased testicular size (present) , Elevated circulating follicle stimulating hormone level (present) , … (more)
Gonadal dysgenesis (present) , Bilateral cryptorchidism (present) , Penoscrotal hypospadias (present) , Decreased testicular size (present) , Elevated circulating follicle stimulating hormone level (present) , Elevated circulating luteinizing hormone level (present) , Non-obstructive azoospermia (present) (less)
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Pathogenic
(Dec 27, 2021)
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criteria provided, single submitter
Method: clinical testing
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Pituitary hormone deficiency, combined, 2
Affected status: unknown
Allele origin:
unknown
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Fulgent Genetics, Fulgent Genetics
Accession: SCV002793657.1
First in ClinVar: Dec 31, 2022 Last updated: Dec 31, 2022 |
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Pathogenic
(Jan 25, 2024)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: unknown
Allele origin:
germline
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Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV000961893.6
First in ClinVar: Aug 14, 2019 Last updated: Feb 14, 2024 |
Comment:
This sequence change creates a premature translational stop signal (p.Leu102Cysfs*8) in the PROP1 gene. While this is not anticipated to result in nonsense mediated decay, … (more)
This sequence change creates a premature translational stop signal (p.Leu102Cysfs*8) in the PROP1 gene. While this is not anticipated to result in nonsense mediated decay, it is expected to disrupt the last 125 amino acid(s) of the PROP1 protein. This variant is present in population databases (rs193922688, gnomAD 0.03%). This premature translational stop signal has been observed in individuals with combined pituitary hormone deficiency in many families and it has been observed in combination with another PROP1 variant in unrelated individuals with this condition (PMID: 9462743, 11081182, 16735499, 17162714, 26111865, 28734020). It has also been observed to segregate with disease in related individuals. This variant is also known as A301G302 deletion and delGA296 (S109X). ClinVar contains an entry for this variant (Variation ID: 8098). Algorithms developed to predict the effect of variants on protein structure and function are not available or were not evaluated for this variant. Experimental studies have shown that this premature translational stop signal affects PROP1 function (PMID: 9462743). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. For these reasons, this variant has been classified as Pathogenic. (less)
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Pathogenic
(Feb 01, 2024)
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criteria provided, single submitter
Method: curation
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Pituitary hormone deficiency, combined, 2
Affected status: no
Allele origin:
germline
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Laboratory of Medical Genetics, National & Kapodistrian University of Athens
Accession: SCV005051942.1
First in ClinVar: Jun 17, 2024 Last updated: Jun 17, 2024 |
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Pathogenic
(Mar 27, 2024)
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criteria provided, single submitter
Method: clinical testing
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Pituitary hormone deficiency, combined, 2
Affected status: unknown
Allele origin:
unknown
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Baylor Genetics
Accession: SCV001162986.2
First in ClinVar: Feb 28, 2020 Last updated: Jun 17, 2024 |
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Pathogenic
(Oct 01, 2004)
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no assertion criteria provided
Method: literature only
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PITUITARY HORMONE DEFICIENCY, COMBINED, 2
Affected status: not provided
Allele origin:
germline
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OMIM
Accession: SCV000028774.6
First in ClinVar: Apr 04, 2013 Last updated: Jul 16, 2016 |
Comment on evidence:
In each of 2 separate families, Wu et al. (1998) showed that 3 sibs with combined pituitary hormone deficiency (CPHD2; 262600) carried a 2-bp deletion … (more)
In each of 2 separate families, Wu et al. (1998) showed that 3 sibs with combined pituitary hormone deficiency (CPHD2; 262600) carried a 2-bp deletion (301A and 302G) leading to a frameshift in the coding sequence starting at codon 101 and premature termination at codon 109. The truncation resulted in the loss of the DNA-binding homeodomain and the C-terminal transactivation domain of PROP1. Cogan et al. (1998) determined the frequency of the 301delAG mutation in exon 2 of PROP1 in 10 independently ascertained combined pituitary hormone deficiency (CPHD) kindreds and 21 sporadic cases of CPHD from 8 different countries. They found that 55% (11 of 20) of the PROP1 alleles were 301delAG in familial CPHD cases. Interestingly, although only 12% (5 of 42) of the PROP1 alleles in the 21 sporadic cases were 301delAG, the frequency of this allele (in 20 of 21 of the sporadic subjects given thyrotropin-releasing hormone stimulation tests) was 50% (3 of 6) in the CPHD cases with pituitary defects, and 0% (0 of 34) in the CPHD cases with hypothalamic defects. Using whole genome radiation hybrid analysis, they localized the PROP1 gene to the distal end of chromosome 5q and identified a tightly linked polymorphic marker, D5S408, which can be used in segregation studies. The authors concluded that analysis of this marker in affected subjects with the 301delAG mutation suggests that rather than being inherited from a common founder, 301delAG may be a recurring mutation. In 2 unrelated females with CPHD, Mendonca et al. (1999) identified homozygosity for the 301AG deletion in the PROP1 gene. MRI findings changed over time in these patients, and 1 had partial cortisol deficiency. The authors concluded that a large sella turcica and an enlarged pituitary anterior lobe with hyperintense enhanced T1 signal on MRI suggests PROP1 deficiency; that pituitary morphology can change during follow-up of patients with PROP1 mutations; and that hormonal deficiencies associated with PROP1 mutations can include the adrenal axis. In 10 CPHD patients from a large Brazilian kindred, 9 of whom were born of consanguineous marriages, Pernasetti et al. (2000) identified homozygosity for the 301AG deletion in PROP1. The authors observed ACTH/cortisol insufficiency in 5 of 6 of the older patients and in one 11-year-old patient, and suggested that the phenotype of this mutation includes late-onset adrenal insufficiency. Riepe et al. (2001) found this mutation in compound heterozygosity with 150delA (601538.0008) in 2 brothers with typical manifestations of PROP1 deficiency. The 301-302delAG frameshift mutation was found in homozygous state as the cause of the CPHD in the Hutterite cases reported by McKusick and Rimoin (1967) (Mosely et al., 2002). In 3 adult sibs, aged 18 to 25 years, with short stature, hypothyroidism, and lack of pubertal maturation, Lee et al. (2004) identified homozygosity for the 301AG deletion in PROP1. All 3 patients responded with a dramatic increase in linear growth to treatment with GH and thyroid replacement administered prior to beginning sex steroid replacement therapy. (less)
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Pathogenic
(Sep 16, 2020)
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no assertion criteria provided
Method: clinical testing
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Combined pituitary hormone deficiency type 2
Affected status: unknown
Allele origin:
germline
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Natera, Inc.
Accession: SCV001452801.1
First in ClinVar: Jan 02, 2021 Last updated: Jan 02, 2021 |
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Pathogenic
(Jun 05, 2024)
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no assertion criteria provided
Method: clinical testing
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PROP1-related condition
Affected status: unknown
Allele origin:
germline
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PreventionGenetics, part of Exact Sciences
Accession: SCV005360889.1
First in ClinVar: Oct 08, 2024 Last updated: Oct 08, 2024 |
Comment:
The PROP1 c.301_302delAG variant is predicted to result in a frameshift and premature protein termination (p.Leu102Cysfs*8). This variant in the homozygous or compound heterozygous state … (more)
The PROP1 c.301_302delAG variant is predicted to result in a frameshift and premature protein termination (p.Leu102Cysfs*8). This variant in the homozygous or compound heterozygous state has been reported in individuals with combined pituitary hormone deficiency in many families (see example: Wu et al. 1998. PubMed ID: 9462743; Avbelj Stefanija et al. 2015. PubMed ID: 26111865; Blum et al. 2018. PubMed ID: 30266296). This variant is reported in 0.033% of alleles in individuals of European (Non-Finnish) descent in gnomAD. Frameshift variants in PROP1 are expected to be pathogenic. This variant is interpreted as pathogenic. (less)
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Pathogenic
(Jun 02, 2022)
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no assertion criteria provided
Method: clinical testing
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Pituitary hormone deficiency, combined, 2
Affected status: yes
Allele origin:
germline
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Clinical Genetics Laboratory, University Hospital Schleswig-Holstein
Accession: SCV002583491.1
First in ClinVar: Oct 15, 2022 Last updated: Oct 15, 2022 |
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not provided
(-)
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no classification provided
Method: literature only
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Pituitary hormone deficiency, combined, 2
Affected status: unknown
Allele origin:
germline
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GeneReviews
Accession: SCV002500843.2
First in ClinVar: Apr 23, 2022 Last updated: Oct 01, 2022 |
Comment:
Common variant in Europe & Latin America [Dusatkova et al 2016]; founder variant in Lithuania [Navardauskaite et al 2014] & Hutterite population [Wu et al … (more)
Common variant in Europe & Latin America [Dusatkova et al 2016]; founder variant in Lithuania [Navardauskaite et al 2014] & Hutterite population [Wu et al 1998]; Impaired gonadotropic function occurs in all individuals with the most common PROP1 variant, c.301_302delAG [Madeira et al 2017]. (less)
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not provided
(-)
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no classification provided
Method: phenotyping only
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Pituitary hormone deficiency, combined, 2
Affected status: unknown
Allele origin:
unknown
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GenomeConnect - Brain Gene Registry
Accession: SCV004012819.1
First in ClinVar: Jul 16, 2023 Last updated: Jul 16, 2023 |
Comment:
Variant interpreted as Likely pathogenic and reported on 01-14-2020 by Lab PreventionGenetics. Assertions are reported exactly as they appear on the patient provided laboratory report. … (more)
Variant interpreted as Likely pathogenic and reported on 01-14-2020 by Lab PreventionGenetics. Assertions are reported exactly as they appear on the patient provided laboratory report. GenomeConnect does not attempt to reinterpret the variant. The IDDRC-CTSA National Brain Gene Registry (BGR) is a study funded by the U.S. National Center for Advancing Translational Sciences (NCATS) and includes 13 Intellectual and Developmental Disability Research Center (IDDRC) institutions. The study is led by Principal Investigator Dr. Philip Payne from Washington University. The BGR is a data commons of gene variants paired with subject clinical information. This database helps scientists learn more about genetic changes and their impact on the brain and behavior. Participation in the Brain Gene Registry requires participation in GenomeConnect. More information about the Brain Gene Registry can be found on the study website - https://braingeneregistry.wustl.edu/. (less)
Clinical Features:
Abnormal circulating carnitine concentration (present) , Intellectual disability (present) , Delayed fine motor development (present) , Delayed gross motor development (present) , Autism (present) , … (more)
Abnormal circulating carnitine concentration (present) , Intellectual disability (present) , Delayed fine motor development (present) , Delayed gross motor development (present) , Autism (present) , Seizure (present) , Male hypogonadism (present) , Short stature (present) , Infantile muscular hypotonia (present) , Abnormal cheek morphology (present) , Abnormal jaw morphology (present) , Wide mouth (present) , Widely spaced teeth (present) (less)
Indication for testing: Diagnostic
Age: 20-29 years
Sex: male
Method: Exome Sequencing
Testing laboratory: PreventionGenetics, part of Exact Sciences
Date variant was reported to submitter: 2020-01-14
Testing laboratory interpretation: Likely pathogenic
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Germline Functional Evidence
There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
HelpTitle | Author | Journal | Year | Link |
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PROP1-Related Combined Pituitary Hormone Deficiency. | Adam MP | - | 2022 | PMID: 20301521 |
NR5A1 c.991-1G > C splice-site variant causes familial 46,XY partial gonadal dysgenesis with incomplete penetrance. | Laan M | Clinical endocrinology | 2021 | PMID: 33296094 |
Combined pituitary hormone deficiency caused by PROP1 mutations: update 20 years post-discovery. | Correa FA | Archives of endocrinology and metabolism | 2019 | PMID: 31090814 |
Molecular analysis of brazilian patients with combined pituitary hormone deficiency and orthotopic posterior pituitary lobe reveals eight different PROP1 alterations with three novel mutations. | Madeira JL | Clinical endocrinology | 2017 | PMID: 28734020 |
Genetics of Combined Pituitary Hormone Deficiency: Roadmap into the Genome Era. | Fang Q | Endocrine reviews | 2016 | PMID: 27828722 |
Genesis of two most prevalent PROP1 gene variants causing combined pituitary hormone deficiency in 21 populations. | Dusatkova P | European journal of human genetics : EJHG | 2016 | PMID: 26059845 |
Novel Mutations in HESX1 and PROP1 Genes in Combined Pituitary Hormone Deficiency. | Avbelj Stefanija M | Hormone research in paediatrics | 2015 | PMID: 26111865 |
The c.301_302delAG PROP1 gene mutation in Romanian patients with multiple pituitary hormone deficiency. | Lazea C | Journal of pediatric endocrinology & metabolism : JPEM | 2015 | PMID: 25581745 |
High prevalence of PROP1 defects in Lithuania: phenotypic findings in an ethnically homogenous cohort of patients with multiple pituitary hormone deficiency. | Navardauskaite R | The Journal of clinical endocrinology and metabolism | 2014 | PMID: 24178788 |
Molecular analysis of PROP1, PIT1, HESX1, LHX3, and LHX4 shows high frequency of PROP1 mutations in patients with familial forms of combined pituitary hormone deficiency. | Vieira TC | Arquivos brasileiros de endocrinologia e metabologia | 2007 | PMID: 18157385 |
The natural history of the R120C PROP1 mutation reveals a wide phenotypic variability in two untreated adult brothers with combined pituitary hormone deficiency. | Vieira TC | Endocrine | 2006 | PMID: 17526949 |
High prevalence of PROP1 gene mutations in Hungarian patients with childhood-onset combined anterior pituitary hormone deficiency. | Halász Z | Endocrine | 2006 | PMID: 17526936 |
Long-term follow-up of combined pituitary hormone deficiency in two siblings with a Prophet of Pit-1 gene mutation. | Georgopoulos NA | Gynecological endocrinology : the official journal of the International Society of Gynecological Endocrinology | 2006 | PMID: 17162714 |
PROP1 gene analysis in Portuguese patients with combined pituitary hormone deficiency. | Lemos MC | Clinical endocrinology | 2006 | PMID: 16984240 |
Combined pituitary hormone deficiency (CPHD) due to a complete PROP1 deletion. | Abrão MG | Clinical endocrinology | 2006 | PMID: 16918947 |
Genetic screening of combined pituitary hormone deficiency: experience in 195 patients. | Reynaud R | The Journal of clinical endocrinology and metabolism | 2006 | PMID: 16735499 |
Waxing and waning of a pituitary mass in a young woman with combined pituitary hormone deficiency (CPHD) due to a PROP-1 mutation. | Nascif SO | Pituitary | 2006 | PMID: 16703408 |
Role of PROP1 in pituitary gland growth. | Ward RD | Molecular endocrinology (Baltimore, Md.) | 2005 | PMID: 15591534 |
Pituitary hormone deficiencies due to transcription factor gene alterations. | Reynaud R | Growth hormone & IGF research : official journal of the Growth Hormone Research Society and the International IGF Research Society | 2004 | PMID: 15519252 |
Long-term growth hormone therapy in adulthood results in significant linear growth in siblings with a PROP-1 gene mutation. | Lee JK | The Journal of clinical endocrinology and metabolism | 2004 | PMID: 15472175 |
Genetic defects in GH synthesis and secretion. | Bona G | European journal of endocrinology | 2004 | PMID: 15339237 |
Pituitary magnetic resonance imaging in 15 patients with Prop1 gene mutations: pituitary enlargement may originate from the intermediate lobe. | Voutetakis A | The Journal of clinical endocrinology and metabolism | 2004 | PMID: 15126542 |
Pituitary magnetic resonance imaging and function in patients with growth hormone deficiency with and without mutations in GHRH-R, GH-1, or PROP-1 genes. | Osorio MG | The Journal of clinical endocrinology and metabolism | 2002 | PMID: 12414875 |
Longitudinal imaging reveals pituitary enlargement preceding hypoplasia in two brothers with combined pituitary hormone deficiency attributable to PROP1 mutation. | Riepe FG | The Journal of clinical endocrinology and metabolism | 2001 | PMID: 11549674 |
Central hypocortisolism as part of combined pituitary hormone deficiency due to mutations of PROP-1 gene. | Asteria C | European journal of endocrinology | 2000 | PMID: 11022176 |
Genetic defects of the growth hormone-insulin-like growth factor axis. | López-Bermejo A | Trends in endocrinology and metabolism: TEM | 2000 | PMID: 10675889 |
Impaired adrenocorticotropin-adrenal axis in combined pituitary hormone deficiency caused by a two-base pair deletion (301-302delAG) in the prophet of Pit-1 gene. | Pernasetti F | The Journal of clinical endocrinology and metabolism | 2000 | PMID: 10634415 |
Combined pituitary hormone deficiency: role of Pit-1 and Prop-1. | Pfäffle RW | Acta paediatrica (Oslo, Norway : 1992). Supplement | 1999 | PMID: 10626543 |
Heritable disorders of pituitary development. | Parks JS | The Journal of clinical endocrinology and metabolism | 1999 | PMID: 10599689 |
"Hot spot" in the PROP1 gene responsible for combined pituitary hormone deficiency. | Deladoëy J | The Journal of clinical endocrinology and metabolism | 1999 | PMID: 10323394 |
Longitudinal hormonal and pituitary imaging changes in two females with combined pituitary hormone deficiency due to deletion of A301,G302 in the PROP1 gene. | Mendonca BB | The Journal of clinical endocrinology and metabolism | 1999 | PMID: 10084575 |
A mutational hot spot in the Prop-1 gene in Russian children with combined pituitary hormone deficiency. | Fofanova OV | Pituitary | 1998 | PMID: 11081182 |
The molecular genetics of growth hormone deficiency. | Procter AM | Human genetics | 1998 | PMID: 9799079 |
The PROP1 2-base pair deletion is a common cause of combined pituitary hormone deficiency. | Cogan JD | The Journal of clinical endocrinology and metabolism | 1998 | PMID: 9745452 |
Mutations in PROP1 cause familial combined pituitary hormone deficiency. | Wu W | Nature genetics | 1998 | PMID: 9462743 |
General Tom Thumb and other midgets. | McKusick VA | Scientific American | 1967 | PMID: 6046325 |
http://www.egl-eurofins.com/emvclass/emvclass.php?approved_symbol=PROP1 | - | - | - | - |
Mosely, C. T., Phillips, J. A., III, Rimoin, D. L. Genetic disorders of the pituitary gland. In: Rimoin, D. L., Connor, J. M., Pyeritz, R. E., Korf, B. R. (eds.) Emery and Rimoin's Principles and Practices of Medical Genetics. (4th ed.) London: Churchill Livingston 2002. P. 2153. Note: Fig. 80.3. | - | - | - | - |
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Text-mined citations for rs193922688 ...
HelpRecord last updated Nov 19, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.