ClinVar Genomic variation as it relates to human health
NC_012920.1(MT-ATP6):m.8993T>G
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
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NC_012920.1(MT-ATP6):m.8993T>G
Variation ID: 9641 Accession: VCV000009641.31
- Type and length
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single nucleotide variant, 1 bp
- Location
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MT: 8993 (GRCh38) [ NCBI UCSC ] MT: 8993 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Mar 24, 2015 Oct 26, 2024 Mar 22, 2021 - HGVS
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Nucleotide Protein Molecular
consequenceNC_012920.1:m.8993T>G - Protein change
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- Other names
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MTATP6, 8993T-G, LEU156ARG
L156R
- Canonical SPDI
- NC_012920.1:8992:T:G
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
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The frequency of the allele represented by this VCV record.
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- Links
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ClinGen: CA250380 Genetic Testing Registry (GTR): GTR000500595 Genetic Testing Registry (GTR): GTR000556568 Genetic Testing Registry (GTR): GTR000556575 Genetic Testing Registry (GTR): GTR000591967 Genetic Testing Registry (GTR): GTR000591969 Genetic Testing Registry (GTR): GTR000591975 Genetic Testing Registry (GTR): GTR000591976 OMIM: 516060.0001 dbSNP: rs199476133 VarSome
Genes
Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
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HI score
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The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
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The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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MT-ATP6 | - | - | GRCh38 | 271 | 317 | |
MT-ATP8 | - | - | GRCh38 | 64 | 106 | |
MT-CO1 | - | - | GRCh38 | 220 | 232 | |
MT-CO2 | - | - | GRCh38 | 121 | 129 | |
MT-CO3 | - | - | GRCh38 | 165 | 180 | |
MT-ND1 | - | - | GRCh38 | 180 | 184 | |
MT-ND2 | - | - | GRCh38 | 176 | 178 | |
MT-ND3 | - | - | GRCh38 | 45 | 60 | |
MT-ND4 | - | - | GRCh38 | 131 | 150 | |
MT-ND4L | - | - | GRCh38 | 30 | 45 |
There are 16 more genes affected by this variant. See the full set of genes in Variation Viewer (GRCh38 , GRCh37).
Conditions - Germline
Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
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Pathogenic (4) |
criteria provided, multiple submitters, no conflicts
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Jun 16, 2024 | RCV000010273.12 | |
Pathogenic (3) |
criteria provided, single submitter
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Oct 17, 2019 | RCV000010274.5 | |
Pathogenic (1) |
criteria provided, single submitter
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Nov 6, 2014 | RCV000191106.2 | |
Pathogenic (3) |
criteria provided, multiple submitters, no conflicts
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May 27, 2022 | RCV000224643.10 | |
Pathogenic (1) |
criteria provided, single submitter
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Apr 9, 2014 | RCV000414771.2 | |
Pathogenic (3) |
reviewed by expert panel
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Mar 22, 2021 | RCV000495419.3 | |
Pathogenic (3) |
criteria provided, multiple submitters, no conflicts
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Jul 18, 2022 | RCV000754646.4 | |
Pathogenic (1) |
criteria provided, single submitter
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Apr 8, 2021 | RCV001376274.1 | |
Pathogenic/Likely pathogenic (2) |
criteria provided, multiple submitters, no conflicts
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May 4, 2022 | RCV001542706.3 | |
Pathogenic (1) |
criteria provided, single submitter
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Sep 22, 2022 | RCV002285006.2 |
Submissions - Germline
Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Pathogenic
(Mar 22, 2021)
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reviewed by expert panel
Method: curation
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Mitochondrial disease
(Mitochondrial inheritance)
Affected status: unknown
Allele origin:
germline
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ClinGen Mitochondrial Disease Nuclear and Mitochondrial Variant Curation Expert Panel, ClinGen
FDA Recognized Database
Accession: SCV001736753.1 First in ClinVar: Jun 19, 2021 Last updated: Jun 19, 2021 |
Comment:
The m.8993T>G (p.L156R) variant in MT-ATP6 has been reported in >16 individuals with primary mitochondrial disease (PS4; PMIDs: 2137962, 8250532, 8240109, 7605802, 8505474, 9221962, 10208283, … (more)
The m.8993T>G (p.L156R) variant in MT-ATP6 has been reported in >16 individuals with primary mitochondrial disease (PS4; PMIDs: 2137962, 8250532, 8240109, 7605802, 8505474, 9221962, 10208283, 16525806, 10660580). There are several reports of de novo occurrences of this variant (PM6_strong, PMIDs: 29602698, 27450679, 12134275). This variant is located at the same amino acid position as another well-known pathogenic variant, m.8993T>C (p.L156P) (PM5). This variant segregated with disease in multiple affected members in multiple families and several healthy family members had lower to undetectable levels of the variant (PP1_moderate; PMIDs: 2137962, 1436530, 1550128, 8095070, 9221962). This variant is absent in population databases after removing known patients with mitochondrial disease (PM2_supporting). In silico tools (APOGEE) predict this variant to be pathogenic (PP3). Cybrid studies supported the functional impact of this variant (PS3_supporting; PMID: 14998933, 8078883, 19875463). In summary, this variant meets criteria to be classified as pathogenic for primary mitochondrial disease inherited in a mitochondrial manner. This classification was approved by the NICHD U24 Mitochondrial Disease Variant Curation Expert Panel on March 22, 2021. Mitochondrial DNA-specific ACMG/AMP criteria applied: PS3_supporting, PS4, PM2_supporting, PM5, PM6_strong, PP1_moderate, PP3). (less)
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Pathogenic
(Jul 15, 2014)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: not provided
Allele origin:
germline
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Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics
Accession: SCV000280809.1
First in ClinVar: Jun 08, 2016 Last updated: Jun 08, 2016 |
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Pathogenic
(Apr 09, 2014)
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criteria provided, single submitter
Method: clinical testing
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Bilateral cleft lip and palate
Camptodactyly of finger Hypertelorism Low-set ears Postaxial hand polydactyly Premature birth Small scrotum Wide intermamillary distance
Affected status: yes
Allele origin:
unknown
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Centre for Mendelian Genomics, University Medical Centre Ljubljana
Accession: SCV000493050.1
First in ClinVar: Jan 13, 2017 Last updated: Jan 13, 2017 |
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Pathogenic
(May 04, 2022)
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criteria provided, single submitter
Method: clinical testing
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Leber optic atrophy
Affected status: unknown
Allele origin:
germline
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Mendelics
Accession: SCV002517649.1
First in ClinVar: May 28, 2022 Last updated: May 28, 2022 |
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Pathogenic
(Sep 22, 2022)
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criteria provided, single submitter
Method: clinical testing
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not specified
(Mitochondrial inheritance)
Affected status: yes
Allele origin:
germline
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Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin
Additional submitter:
CUBI - Core Unit Bioinformatics, Berlin Institute of Health
Accession: SCV002574882.1
First in ClinVar: Sep 24, 2022 Last updated: Sep 24, 2022 |
Clinical Features:
Hypotonia (present) , Motor delay (present) , Lactic acidosis (present)
Sex: female
Tissue: Blood
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Pathogenic
(Jul 18, 2022)
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criteria provided, single submitter
Method: clinical testing
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Mitochondrial complex 5 (ATP synthase) deficiency, mitochondrial type 1
Affected status: yes
Allele origin:
germline
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MGZ Medical Genetics Center
Accession: SCV002581009.1
First in ClinVar: Oct 15, 2022 Last updated: Oct 15, 2022
Comment:
ACMG criteria applied: PS4, PM6_STR, PM5, PP1_MOD, PS3_SUP, PM2_SUP, PP3
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Number of individuals with the variant: 2
Sex: female
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Pathogenic
(Nov 30, 2023)
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criteria provided, single submitter
Method: clinical testing
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Leigh syndrome
(Mitochondrial inheritance)
Affected status: yes
Allele origin:
germline
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Institute of Medical Genetics and Applied Genomics, University Hospital Tübingen
Accession: SCV004171237.1
First in ClinVar: Dec 02, 2023 Last updated: Dec 02, 2023 |
Clinical Features:
Hypotonia (present) , Global developmental delay (present) , Motor delay (present) , Increased circulating lactate concentration (present) , Persistent pupillary membrane (present)
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Pathogenic
(May 27, 2022)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: yes
Allele origin:
germline
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Clinical Genetics Laboratory, Skane University Hospital Lund
Accession: SCV005199232.1
First in ClinVar: Aug 25, 2024 Last updated: Aug 25, 2024 |
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Pathogenic
(Nov 06, 2014)
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criteria provided, single submitter
Method: clinical testing
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Ataxia
(Mitochondrial inheritance)
Affected status: yes
Allele origin:
maternal
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Baylor Genetics
Study: Adult_WES
Accession: SCV000245508.1 First in ClinVar: Sep 29, 2015 Last updated: Sep 29, 2015 |
Comment:
This variant has been previously reported as disease-causing and was found once in our laboratory homoplasmic in a 22-year-old female with ataxia, abnormal movements - … (more)
This variant has been previously reported as disease-causing and was found once in our laboratory homoplasmic in a 22-year-old female with ataxia, abnormal movements - inherited from a heteroplasmic mother (less)
Age: 20-29 years
Sex: female
Ethnicity/Population group: Hispanic Americans
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Pathogenic
(May 24, 2018)
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criteria provided, single submitter
Method: clinical testing
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Not Provided
Affected status: unknown
Allele origin:
germline
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ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
Accession: SCV000885721.1
First in ClinVar: Jun 08, 2016 Last updated: Jun 08, 2016 |
Comment:
The m.8993T>G affects the MT-ATP6 gene, and this well-studied variant accounts of the majority of patients diagnosed with Mitochondrial DNA (mtDNA)-associated Leigh syndrome and NARP … (more)
The m.8993T>G affects the MT-ATP6 gene, and this well-studied variant accounts of the majority of patients diagnosed with Mitochondrial DNA (mtDNA)-associated Leigh syndrome and NARP (neurogenic muscle weakness, ataxia, and retinitis pigmentosa; see GeneReviews: NBK1173). (less)
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Pathogenic
(Oct 17, 2019)
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criteria provided, single submitter
Method: clinical testing
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NARP syndrome
Affected status: unknown
Allele origin:
germline
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Wong Mito Lab, Molecular and Human Genetics, Baylor College of Medicine
Accession: SCV000997424.1
First in ClinVar: Nov 02, 2019 Last updated: Nov 02, 2019 |
Comment:
The NC_012920.1:m.8993T>G (YP_003024031.1:p.Leu156Arg) variant in MTATP6 gene is interpretated to be a Pathogenic variant based on the modified ACMG guidelines (unpublished). This variant meets the … (more)
The NC_012920.1:m.8993T>G (YP_003024031.1:p.Leu156Arg) variant in MTATP6 gene is interpretated to be a Pathogenic variant based on the modified ACMG guidelines (unpublished). This variant meets the following evidence codes: PS1, PS3 (less)
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Pathogenic
(-)
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criteria provided, single submitter
Method: research
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Mitochondrial complex 5 (ATP synthase) deficiency, mitochondrial type 1
(Sporadic)
Affected status: yes
Allele origin:
de novo
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Kids Research, The Children's Hospital at Westmead
Accession: SCV001244727.1
First in ClinVar: May 04, 2020 Last updated: May 04, 2020 |
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Pathogenic
(Apr 08, 2021)
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criteria provided, single submitter
Method: research
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Rod-cone dystrophy
Affected status: yes
Allele origin:
germline
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Ocular Genomics Institute, Massachusetts Eye and Ear
Accession: SCV001573357.1
First in ClinVar: May 10, 2021 Last updated: May 10, 2021 |
Comment:
The MT-ATP6 c.467T>G variant was identified in an individual with retinitis pigmentosa with a presumed mitochondrial inheritance pattern. Through a review of available evidence we … (more)
The MT-ATP6 c.467T>G variant was identified in an individual with retinitis pigmentosa with a presumed mitochondrial inheritance pattern. Through a review of available evidence we were able to apply the following criteria: PS3, PS4, PP1. Based on this evidence we have classified this variant as Pathogenic. (less)
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Likely pathogenic
(-)
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criteria provided, single submitter
Method: clinical testing
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Leber optic atrophy
Affected status: yes
Allele origin:
germline
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Genomics England Pilot Project, Genomics England
Accession: SCV001760537.1
First in ClinVar: Jul 27, 2021 Last updated: Jul 27, 2021 |
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Pathogenic
(Mar 15, 2023)
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criteria provided, single submitter
Method: clinical testing
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Mitochondrial disease
Affected status: unknown
Allele origin:
unknown
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Illumina Laboratory Services, Illumina
Accession: SCV004014679.1
First in ClinVar: Jul 22, 2023 Last updated: Jul 22, 2023 |
Comment:
The MT-ATP6 c.467T>G (p.Leu156Arg) variant, also known as m.8993T>G variant, is a mitochondrial missense variant that results in the substitution of leucine at amino acid … (more)
The MT-ATP6 c.467T>G (p.Leu156Arg) variant, also known as m.8993T>G variant, is a mitochondrial missense variant that results in the substitution of leucine at amino acid position 156 with arginine. Across a selection of the available literature, the c.467T>G variant has been identified in at least 16 unrelated individuals with primary mitochondrial disease (PMID: 2137962; PMID: 8250532; PMID: 9221962). Clinical features and onset of symptoms vary depending on the levels of heteroplasmy, with a direct correlation between levels of heteroplasmy and severity of symptoms. In general, affected individuals show 85-95% heteroplasmy in blood and other tissues. While the variant has been shown to segregate with the disorder in multiple families, there are several reports of the variant in a de novo state as well (PMID: 9221962; PMID: 27450679; PMID: 29602698). Another variant at the same amino acid position, c.467T>C (p.Leu156Pro), is also a well-known pathogenic variant for primary mitochondrial disease. The c.467T>G variant is not found in version 3.1.2 of the Genome Aggregation Database. Cybrid cell lines with this variant show ATP synthesis defects (PMID: 19875463). Based on the available evidence, the c.467T>G (p.Leu156Arg) variant is classified as pathogenic for primary mitochondrial disease. (less)
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Pathogenic
(Jun 16, 2024)
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criteria provided, single submitter
Method: clinical testing
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Leigh syndrome
(Mitochondrial inheritance)
Affected status: yes
Allele origin:
de novo
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Institute of Human Genetics, University of Leipzig Medical Center
Accession: SCV004100787.2
First in ClinVar: Nov 04, 2023 Last updated: Oct 13, 2024 |
Comment:
Criteria applied: PS4,PM6_STR,PM5,PP1_MOD,PS3_SUP,PM2_SUP,PP3
Clinical Features:
Low-set ears (present) , Bilateral single transverse palmar creases (present) , 2-3 toe syndactyly (present) , Epicanthus (present) , Hepatosplenomegaly (present) , Hypochromic microcytic anemia … (more)
Low-set ears (present) , Bilateral single transverse palmar creases (present) , 2-3 toe syndactyly (present) , Epicanthus (present) , Hepatosplenomegaly (present) , Hypochromic microcytic anemia (present) , Macrocephaly (present) , Febrile seizure (within the age range of 3 months to 6 years) (present) , Hypotonia (present) , Periventricular leukomalacia (present) , Clinodactyly of the 5th toe (present) , Umbilical hernia (present) (less)
Sex: female
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Pathogenic
(Sep 29, 2016)
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no assertion criteria provided
Method: clinical testing
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Leigh syndrome
Affected status: yes
Allele origin:
unknown
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Centre for Mendelian Genomics, University Medical Centre Ljubljana
Accession: SCV000492530.1
First in ClinVar: Mar 24, 2015 Last updated: Mar 24, 2015 |
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Pathogenic
(Aug 01, 2009)
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no assertion criteria provided
Method: literature only
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NARP SYNDROME
Affected status: not provided
Allele origin:
germline
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OMIM
Accession: SCV000030498.2
First in ClinVar: Apr 04, 2013 Last updated: Feb 01, 2019 |
Comment on evidence:
Holt et al. (1990) found a heteroplasmic T-to-G transversion at nucleotide pair 8993 in a maternal pedigree which resulted in the change of a hydrophobic … (more)
Holt et al. (1990) found a heteroplasmic T-to-G transversion at nucleotide pair 8993 in a maternal pedigree which resulted in the change of a hydrophobic leucine to a hydrophilic arginine at position 156 in subunit 6 of mitochondrial H(+)-ATPase. The clinical symptoms varied in proportion to the percentage of mutant mtDNAs but the most common clinical presentation included neurogenic muscle weakness, ataxia, and retinitis pigmentosa, leading to the designation of NARP syndrome (551500). The insertion of an arginine in the hydrophobic sequence of ATPase 6 probably interferes with the hydrogen ion channel formed by subunits 6 and 9 of the ATPase, thus causing failure of ATP synthesis. Harding et al. (1992) demonstrated that prenatal diagnosis was possible, although the approach was hampered by incomplete knowledge concerning the proportion of mutant mtDNA and its relationship to disease severity, how it may change during fetal and postnatal development, and its tissue distribution. In families with mitochondrial complex V (ATP synthase) deficiency mitochondrial type 1 (MC5DM1; 500015) resulting in Leigh syndrome (see 256000), Tatuch et al. (1992) and Shoffner et al. (1992) identified a nucleotide 8993 mutation in the MTAPT6 gene. Tatuch et al. (1992) found the heteroplasmic mtDNA mutation in a female infant showing lactic acidemia, hypotonia, and neurodegenerative disease leading to death at the age of 7 months. Autopsy revealed lesions typical of Leigh disease, both in the basal ganglia and in the brainstem. A maternal uncle and aunt died 5 months and 1 year, respectively, after a similar clinical course, while another maternal uncle, 33 years of age, had retinitis pigmentosa, ataxia, and mental retardation. The index patient had more than 95% abnormal mtDNA in her skin fibroblasts, brain, kidney, and liver tissues, as measured by laser densitometry. The maternal aunt who died at 1 year likewise had more than 95% abnormal mtDNA in her lymphoblasts. The uncle with retinitis pigmentosa had 78% and 79% abnormal mtDNA in his skin fibroblasts and lymphoblasts, respectively, while an asymptomatic maternal aunt and her son had no trace of the mutation. The mother of the index case had 71% and 39% abnormal mtDNA in her skin fibroblasts and lymphoblasts, respectively. Shoffner et al. (1992) reported a family which was heteroplasmic for the ATPase 6 nucleotide 8993 mutation in which 2 daughters died at ages 2.5 years and 14 months. Pathologic analyses showed classic basal ganglial lesions, vascular proliferation, and glioses. Two brothers manifested psychomotor retardation, ataxia, hypotonia, and retinal degeneration. The mother had retinal degeneration and experienced migraine headaches. The mother's 2 sisters were normal. The 4 affected children had high levels of mutant mtDNA, in excess of 95% by Southern blot. The mother had a 78% level of mutant mtDNA while her 2 sisters had 100% normal mtDNA. Ciafaloni et al. (1993) described 2 sisters with Leigh syndrome who had a T-to-G transversion at nucleotide 8993 in the MTATP6 gene. The asymptomatic mother had the same mutation. All 3 were heteroplasmic. The proportion of mutant genomes was lower in the mother's blood than in the blood of the more mildly affected sister, whereas all tissues from the other sister were almost homoplasmic for the mutation. Santorelli et al. (1993) found the T-to-G point mutation at nucleotide 8993 in 12 patients with Leigh syndrome from 10 unrelated families. Pastores et al. (1994) expanded the clinical phenotype of the nucleotide 8993 mtDNA mutations to include hypertrophic cardiomyopathy and confirmed its role in producing Leigh syndrome. The patient was a boy of Chinese descent who presented at the age of 6 months with a history of developmental delay and hypotonia and who had recurrent lactic acidosis. The mother's first pregnancy resulted in the birth of a stillborn female; an apparently healthy older brother had died suddenly at age 2 months. The 8993T-G mutation was heteroplasmic in the patient's skeletal muscle (90%) and fibroblasts (90%). The identical mutation was present in leukocytes (38%) isolated from the mother, but not from the father or maternal grandmother. Degoul et al. (1995) found the 8993T-G in a family with Leigh syndrome. The proband, who died at 9 years of age, developed hypotonia in the first 6 months of life and developmental retardation was noted. At 3 years of age he showed ataxia, dysmetria, myopathic weakness, nystagmus and ptosis. The electroretinogram was altered. She became deaf and developed progressive spasticity. Blood lactate concentration was normal. In contrast, lactate concentration in the CSF was always elevated. Two brothers died with acute apnea during infectious episodes, before the end of their first year. An older sister was mentally retarded, with ataxia, dysarthria, dystonia, and pes cavus, and had retinal degeneration. The mother's brother was mentally retarded and severely handicapped. Except for the father, all members of the family showed the mutation in all tissues studied, with high percentages in the 2 symptomatic sisters and even in 1 asymptomatic boy. Ferlin et al. (1997) reported a child with Leigh syndrome who died at age 14 months. Genetic analysis identified the 8993T-G mutation in 3 generations of the family and showed that the percentage of mutant mtDNA increased through each generation. The maternal grandmother of the proband, the mother, and the eldest aunt had 10%, 52%, and 50% mutant mtDNA in lymphocytes, respectively. The proband's mother and the proband had 84% and 90% mutant mtDNA in skin fibroblasts, respectively. The eldest aunt terminated a pregnancy when the 8993T-G mutation was identified in chorionic villi. In fetal tissues, the mutation load ranged from 91 to 96%. Ferlin et al. (1997) concluded that the findings in this family were consistent with a threshold effect, in which over 90% mutant mtDNA load results in clinical disease, and noted that prenatal diagnosis is feasible. Blok et al. (1997) analyzed mtDNA in oocytes from an asymptomatic mother of 3 children exhibiting heteroplasmic expression of the 8993T-G mutation associated with Leigh syndrome. The mother had 50% mutant mtDNA in her blood. One of the 7 oocytes analyzed showed no evidence of the mutation, while the remaining 6 had a mutant load of more than 95%. Blok et al. (1997) suggested that this observation reflected preferential amplification of the mtDNA variant during oogenesis. During formation of the zygote, mtDNA is derived exclusively from the oocyte; thus, it is possible that a de novo mutation may arise during oogenesis. A first carrier of a de novo mutation may be a mother who exhibits mosaicism for the mutation restricted to oocytes. However, the usual finding is that mothers of patients with Leigh syndrome and the 8993T-G mutation have substantial levels of the mutant mtDNA (38 to 76%). Takahashi et al. (1998) reported the case of a 1-year-old boy with Leigh syndrome associated with the 8993T-G mutation whose mother did not have the mutant mtDNA in her blood or urine sediment cells. Thus, a de novo mutation had occurred at a high level in oocytes, thereby causing Leigh syndrome in the boy. Generalized hypotonia was noted at birth. He developed apnea attacks and altered consciousness after upper respiratory infections at the ages of 2 and 4 months. At the age of 7 months, he showed symptoms of brainstem dysfunction, such as irregular respiration and swallowing difficulty. At the age of 9 months, growth retardation and microcephaly were obvious. Laboratory examinations showed increased lactate and pyruvate levels in blood and cerebrospinal fluid. In plants, cytoplasmic male sterility (CMS) is a mitochondrially inherited inability to produce viable pollen, and has been observed in more than 150 different plant species. Kempken et al. (1998) pointed out that in sorghum RNA editing is required to generate codons that encode leucine residues at positions equivalent to human 156 and 217. Loss of ATP6 RNA editing, as it occurs in sorghum, thus mimics mutations in human mitochondrial diseases. In all ATP6 protein sequences found in databases, including protists, plants (edited sequence), fungi, and animals, both amino acid positions are completely conserved. White et al. (1999) performed prenatal diagnosis in 2 mothers at risk of having affected children. One was the sister of a severely affected individual, and had previously had an unaffected child and a stillborn child. The other mother had 2 unaffected children and 2 affected children. The 8993T-G transversion was not found in the chorionic villus sample from 1 fetus or in the amniocytes from the other fetus. Both pregnancies were continued, and the resulting children were healthy at 2 years and 5 years of age. In 3 patients from 2 unrelated families, Baracca et al. (2000) investigated the biochemical phenotype associated with the 8993T-G mutation in the MTATP6 gene. All 3 carried more than 80% mutant genome in platelets and were manifesting clinically various degrees of the NARP syndrome phenotype. Their results suggested that the 8993T-G mutation induces a structural defect in F1F0-ATPase that causes a severe impairment of ATP synthesis. Kerrison et al. (2000) described the progression of retinopathy in NARP syndrome due to the T-to-G point mutation at the mtDNA nucleotide position 8993 in the MTATP6 gene. Prior to the onset of visual field constriction, ophthalmoscopy revealed salt-and-pepper retinopathy. After the visual fields had become constricted, fundus examination showed diffuse peripheral bone spicule formation, optic nerve pallor, and arteriolar attenuation consistent with retinitis pigmentosa. The authors stressed that mild mottling of the peripheral retinal pigment epithelium (salt-and-pepper retinopathy or retinitis pigmentosa sine pigmento) does not represent a specific entity but is an early stage of the retinitis pigmentosa, whether the patient has NARP or isolated retinitis pigmentosa. Hayashi et al. (2000) reported the histopathologic findings in the eyes from a patient with Leigh syndrome associated with the 8993T-G point mutation in mtDNA. Ophthalmologic signs and symptoms of Leigh syndrome include nystagmus, ophthalmoplegia, strabismus, optic nerve atrophy, and loss of the foveal reflex. A child with hypotonia, developmental delay, persistent lactic acidosis, seizures, and ataxia died of aspiration pneumonia at age 15 months. Analysis of mtDNA was positive for the 8993T-G mutation. The proportion of mutant genomes was estimated at approximately 95%. Light microscopic examination of the left eye revealed thinning of the nerve fiber and ganglion cell layers in the nasal macula and mild atrophy of the temporal optic nerve. Electron microscopy of the right eye showed numerous distended mitochondria in all cells, particularly in the retinal pigment epithelium, nonpigmented ciliary epithelium, and corneal endothelium. By transferring NARP mutant mtDNA (8993G-T in the MTATP6 gene) from fetal fibroblasts to lung carcinoma and osteosarcoma cells lacking endogenous mtDNA by cell-cytoplast fusion, Nijtmans et al. (2001) created mitochondrial transformant cells, or cybrids, able to grow in the absence of uridine. Immunoblot analysis revealed an abnormal amount of subcomplexes, F1-ATPase and V*, of mitochondrial ATP synthase. The cybrids had decreased subcomplex V assembly and decreased ATP synthesis capacity. However, the cells had no marked phenotype, suggesting that the effects of this mutation are subtle and have no effect on cell viability. Geromel et al. (2001) investigated the oxidative stress resulting from the NARP mutation in MTATP6, using cultured skin fibroblasts from 2 NARP patients presenting with an isolated complex V deficiency. A huge induction of the superoxide dismutase (147450 and 147460) activity was observed in these fibroblasts harboring more than 90% of mutant mitochondrial DNA. The oxidative stress denoted by the high SOD activity was associated with increased cell death. In glucose-rich medium, apoptosis appeared as the main cell death process associated with complex V deficiency. Complex V-deficient fibroblasts were successfully rescued by perfluoro-tris-phenyl nitrone, an antioxidant spin-trap molecule. The authors hypothesized that the superoxide production associated with the ATPase deficiency triggered by the NARP mutation could be sufficient to override cell antioxidant defenses and to result in cell commitment to die. Porto et al. (2001) reported an otherwise healthy 42-year-old woman with isolated late-onset cone-rod dystrophy characterized by difficulty driving at night beginning at age 40 years with deterioration of central and color vision due to the T8993G mitochondrial mutation. Two of her sons had NARP syndrome. A third son who was clinically diagnosed with Leigh syndrome died at age 4 years, prior to the recognition of the T8993G mutation in this family. The mother's mutation load was 50% T8993G mtDNA, while her sons with NARP had 75% T8993G mtDNA. The authors stated that Leigh disease is related to extreme heteroplasmy (more than 90%). They felt this family illustrated the remarkably variable expression of retinal and systemic manifestations related to the T8993G mutation, ranging from an isolated late-onset cone-rod dystrophy to a severe neurodegenerative process with a dramatic outcome. Porto et al. (2001) recommended genetic counseling for retinal dystrophy patients and emphasized careful evaluation of the family medical history. The 8993T-G mutation in MTATP6 impairs mitochondrial ATP synthesis. To overcome the biochemical defect, Manfredi et al. (2002) expressed wildtype ATPase 6 protein allotopically. The protein was derived from nucleus-transfected constructs encoding an amino-terminal mitochondrial targeting signal appended to a recoded ATPase 6 gene (made compatible with the universal genetic code) that also contained a carboxy-terminal fluorescent epitope tag. After transfection of human cells, the precursor polypeptide was expressed, imported into and processed within mitochondria, and incorporated into complex V. Allotopic expression of stably transfected constructs in cytoplasmic hybrids (cybrids) homoplasmic with respect to the 8993T-G mutation showed a significantly improved recovery after growth in selective medium as well as a significant increase in ATP synthesis. This was said to be the first successful demonstration of allotopic expression of an mtDNA-encoded polypeptide in mammalian cells and could form the basis of a genetic approach to treatment of a number of human mitochondrial disorders. Srivastava and Moraes (2001) showed that a mitochondrially targeted PstI restriction endonuclease degraded mtDNA harboring PstI sites, in some cases leading to a complete loss of mitochondrial genomes. When expressed in a heteroplasmic rodent cell line, containing 1 mtDNA haplotype with 2 sites for PstI and another haplotype having none, the mitochondrial PstI caused a significant shift in heteroplasmy, with an accumulation of the mtDNA haplotype lacking PstI sites. These experiments provided proof of the principle that restriction endonucleases may be feasible tools for genetic therapy of a subgroup of mitochondrial disorders. Patients harboring the T8993G mutation are potential candidates, since the mutation creates a novel PstI site which is not present in wildtype human mtDNA. In 6 individuals from 3 unrelated Italian families who had the 8993T-G mutation, Carelli et al. (2002) showed a close relationship between extent of tissue heteroplasmy, expression of the biochemical defect in platelets, and clinical involvement. A defect of ATP synthesis was evident even at low levels of mutant heteroplasmy (10 to 34% of normal) in the absence of clinical symptoms. ATP synthesis was severely decreased (4 to 9% of control values) in patients with high levels of mutation (greater than 80%), who showed the more severe clinical phenotypes of NARP and Leigh syndromes. No biochemical threshold effect was found. Carelli et al. (2002) noted that the combined effect of decreased ATP synthesis and increased reactive oxygen species production underlie the pathophysiology of mitochondrial diseases. Mattiazzi et al. (2004) showed that the 8993T-G mutation inhibits oxidative phosphorylation and results in enhanced free radical production. Antioxidants restored respiration and partially rescued ATP synthesis in cells harboring the T8993G mutation. The authors hypothesized that free radicals may play an important role in the pathogenesis of NARP/MILS and that antioxidants may be considered as a potentially useful tool in its treatment. Jung et al. (2007) reported a family with the 8993T-G mutation in which adult-onset progressive myoclonic epilepsy was a prominent feature. The proband was a 46-year-old woman with myoclonus, epilepsy, ataxia, and peripheral neuropathy. She had onset of myoclonus at age 19, which progressively worsened over her life. She did not have retinitis pigmentosa. Her mother had possible epilepsy, and 1 of her daughters developed epilepsy and ataxia in her late teens. There was a history of 3 infantile deaths on the maternal side, resulting from seizures in 2. Genetic analysis identified heteroplasmy for the 8993T-G mutation in the proband (80% in fibroblasts) and her daughter (60% in lymphocytes). Sgarbi et al. (2009) demonstrated that human fibroblasts containing the NARP-associated 8993T-G mutation could be protected from cell death when treated with alpha-ketoglutarate/aspartate to boost mitochondrial substrate-level phosphorylation (70% vs 5%; treated vs untreated survival after 72 hours). Homoplasmic 8993T-G cybrids showed similar results (75% vs 15%; treated vs untreated survival after 72 hours). In untreated fibroblasts and cybrids, the decrease in ATP content paralleled cell death, but ATP content returned to control levels after treatment. The findings indicated that ATP synthase-deficient cells can be rescued by increasing mitochondrial substrate-level phosphorylation, suggesting a potential therapeutic option for patients with such disorders. (less)
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Pathogenic
(Aug 01, 2009)
|
no assertion criteria provided
Method: literature only
|
MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, MITOCHONDRIAL TYPE 1
Affected status: not provided
Allele origin:
germline
|
OMIM
Accession: SCV000030497.2
First in ClinVar: Apr 04, 2013 Last updated: Feb 01, 2019 |
Comment on evidence:
Holt et al. (1990) found a heteroplasmic T-to-G transversion at nucleotide pair 8993 in a maternal pedigree which resulted in the change of a hydrophobic … (more)
Holt et al. (1990) found a heteroplasmic T-to-G transversion at nucleotide pair 8993 in a maternal pedigree which resulted in the change of a hydrophobic leucine to a hydrophilic arginine at position 156 in subunit 6 of mitochondrial H(+)-ATPase. The clinical symptoms varied in proportion to the percentage of mutant mtDNAs but the most common clinical presentation included neurogenic muscle weakness, ataxia, and retinitis pigmentosa, leading to the designation of NARP syndrome (551500). The insertion of an arginine in the hydrophobic sequence of ATPase 6 probably interferes with the hydrogen ion channel formed by subunits 6 and 9 of the ATPase, thus causing failure of ATP synthesis. Harding et al. (1992) demonstrated that prenatal diagnosis was possible, although the approach was hampered by incomplete knowledge concerning the proportion of mutant mtDNA and its relationship to disease severity, how it may change during fetal and postnatal development, and its tissue distribution. In families with mitochondrial complex V (ATP synthase) deficiency mitochondrial type 1 (MC5DM1; 500015) resulting in Leigh syndrome (see 256000), Tatuch et al. (1992) and Shoffner et al. (1992) identified a nucleotide 8993 mutation in the MTAPT6 gene. Tatuch et al. (1992) found the heteroplasmic mtDNA mutation in a female infant showing lactic acidemia, hypotonia, and neurodegenerative disease leading to death at the age of 7 months. Autopsy revealed lesions typical of Leigh disease, both in the basal ganglia and in the brainstem. A maternal uncle and aunt died 5 months and 1 year, respectively, after a similar clinical course, while another maternal uncle, 33 years of age, had retinitis pigmentosa, ataxia, and mental retardation. The index patient had more than 95% abnormal mtDNA in her skin fibroblasts, brain, kidney, and liver tissues, as measured by laser densitometry. The maternal aunt who died at 1 year likewise had more than 95% abnormal mtDNA in her lymphoblasts. The uncle with retinitis pigmentosa had 78% and 79% abnormal mtDNA in his skin fibroblasts and lymphoblasts, respectively, while an asymptomatic maternal aunt and her son had no trace of the mutation. The mother of the index case had 71% and 39% abnormal mtDNA in her skin fibroblasts and lymphoblasts, respectively. Shoffner et al. (1992) reported a family which was heteroplasmic for the ATPase 6 nucleotide 8993 mutation in which 2 daughters died at ages 2.5 years and 14 months. Pathologic analyses showed classic basal ganglial lesions, vascular proliferation, and glioses. Two brothers manifested psychomotor retardation, ataxia, hypotonia, and retinal degeneration. The mother had retinal degeneration and experienced migraine headaches. The mother's 2 sisters were normal. The 4 affected children had high levels of mutant mtDNA, in excess of 95% by Southern blot. The mother had a 78% level of mutant mtDNA while her 2 sisters had 100% normal mtDNA. Ciafaloni et al. (1993) described 2 sisters with Leigh syndrome who had a T-to-G transversion at nucleotide 8993 in the MTATP6 gene. The asymptomatic mother had the same mutation. All 3 were heteroplasmic. The proportion of mutant genomes was lower in the mother's blood than in the blood of the more mildly affected sister, whereas all tissues from the other sister were almost homoplasmic for the mutation. Santorelli et al. (1993) found the T-to-G point mutation at nucleotide 8993 in 12 patients with Leigh syndrome from 10 unrelated families. Pastores et al. (1994) expanded the clinical phenotype of the nucleotide 8993 mtDNA mutations to include hypertrophic cardiomyopathy and confirmed its role in producing Leigh syndrome. The patient was a boy of Chinese descent who presented at the age of 6 months with a history of developmental delay and hypotonia and who had recurrent lactic acidosis. The mother's first pregnancy resulted in the birth of a stillborn female; an apparently healthy older brother had died suddenly at age 2 months. The 8993T-G mutation was heteroplasmic in the patient's skeletal muscle (90%) and fibroblasts (90%). The identical mutation was present in leukocytes (38%) isolated from the mother, but not from the father or maternal grandmother. Degoul et al. (1995) found the 8993T-G in a family with Leigh syndrome. The proband, who died at 9 years of age, developed hypotonia in the first 6 months of life and developmental retardation was noted. At 3 years of age he showed ataxia, dysmetria, myopathic weakness, nystagmus and ptosis. The electroretinogram was altered. She became deaf and developed progressive spasticity. Blood lactate concentration was normal. In contrast, lactate concentration in the CSF was always elevated. Two brothers died with acute apnea during infectious episodes, before the end of their first year. An older sister was mentally retarded, with ataxia, dysarthria, dystonia, and pes cavus, and had retinal degeneration. The mother's brother was mentally retarded and severely handicapped. Except for the father, all members of the family showed the mutation in all tissues studied, with high percentages in the 2 symptomatic sisters and even in 1 asymptomatic boy. Ferlin et al. (1997) reported a child with Leigh syndrome who died at age 14 months. Genetic analysis identified the 8993T-G mutation in 3 generations of the family and showed that the percentage of mutant mtDNA increased through each generation. The maternal grandmother of the proband, the mother, and the eldest aunt had 10%, 52%, and 50% mutant mtDNA in lymphocytes, respectively. The proband's mother and the proband had 84% and 90% mutant mtDNA in skin fibroblasts, respectively. The eldest aunt terminated a pregnancy when the 8993T-G mutation was identified in chorionic villi. In fetal tissues, the mutation load ranged from 91 to 96%. Ferlin et al. (1997) concluded that the findings in this family were consistent with a threshold effect, in which over 90% mutant mtDNA load results in clinical disease, and noted that prenatal diagnosis is feasible. Blok et al. (1997) analyzed mtDNA in oocytes from an asymptomatic mother of 3 children exhibiting heteroplasmic expression of the 8993T-G mutation associated with Leigh syndrome. The mother had 50% mutant mtDNA in her blood. One of the 7 oocytes analyzed showed no evidence of the mutation, while the remaining 6 had a mutant load of more than 95%. Blok et al. (1997) suggested that this observation reflected preferential amplification of the mtDNA variant during oogenesis. During formation of the zygote, mtDNA is derived exclusively from the oocyte; thus, it is possible that a de novo mutation may arise during oogenesis. A first carrier of a de novo mutation may be a mother who exhibits mosaicism for the mutation restricted to oocytes. However, the usual finding is that mothers of patients with Leigh syndrome and the 8993T-G mutation have substantial levels of the mutant mtDNA (38 to 76%). Takahashi et al. (1998) reported the case of a 1-year-old boy with Leigh syndrome associated with the 8993T-G mutation whose mother did not have the mutant mtDNA in her blood or urine sediment cells. Thus, a de novo mutation had occurred at a high level in oocytes, thereby causing Leigh syndrome in the boy. Generalized hypotonia was noted at birth. He developed apnea attacks and altered consciousness after upper respiratory infections at the ages of 2 and 4 months. At the age of 7 months, he showed symptoms of brainstem dysfunction, such as irregular respiration and swallowing difficulty. At the age of 9 months, growth retardation and microcephaly were obvious. Laboratory examinations showed increased lactate and pyruvate levels in blood and cerebrospinal fluid. In plants, cytoplasmic male sterility (CMS) is a mitochondrially inherited inability to produce viable pollen, and has been observed in more than 150 different plant species. Kempken et al. (1998) pointed out that in sorghum RNA editing is required to generate codons that encode leucine residues at positions equivalent to human 156 and 217. Loss of ATP6 RNA editing, as it occurs in sorghum, thus mimics mutations in human mitochondrial diseases. In all ATP6 protein sequences found in databases, including protists, plants (edited sequence), fungi, and animals, both amino acid positions are completely conserved. White et al. (1999) performed prenatal diagnosis in 2 mothers at risk of having affected children. One was the sister of a severely affected individual, and had previously had an unaffected child and a stillborn child. The other mother had 2 unaffected children and 2 affected children. The 8993T-G transversion was not found in the chorionic villus sample from 1 fetus or in the amniocytes from the other fetus. Both pregnancies were continued, and the resulting children were healthy at 2 years and 5 years of age. In 3 patients from 2 unrelated families, Baracca et al. (2000) investigated the biochemical phenotype associated with the 8993T-G mutation in the MTATP6 gene. All 3 carried more than 80% mutant genome in platelets and were manifesting clinically various degrees of the NARP syndrome phenotype. Their results suggested that the 8993T-G mutation induces a structural defect in F1F0-ATPase that causes a severe impairment of ATP synthesis. Kerrison et al. (2000) described the progression of retinopathy in NARP syndrome due to the T-to-G point mutation at the mtDNA nucleotide position 8993 in the MTATP6 gene. Prior to the onset of visual field constriction, ophthalmoscopy revealed salt-and-pepper retinopathy. After the visual fields had become constricted, fundus examination showed diffuse peripheral bone spicule formation, optic nerve pallor, and arteriolar attenuation consistent with retinitis pigmentosa. The authors stressed that mild mottling of the peripheral retinal pigment epithelium (salt-and-pepper retinopathy or retinitis pigmentosa sine pigmento) does not represent a specific entity but is an early stage of the retinitis pigmentosa, whether the patient has NARP or isolated retinitis pigmentosa. Hayashi et al. (2000) reported the histopathologic findings in the eyes from a patient with Leigh syndrome associated with the 8993T-G point mutation in mtDNA. Ophthalmologic signs and symptoms of Leigh syndrome include nystagmus, ophthalmoplegia, strabismus, optic nerve atrophy, and loss of the foveal reflex. A child with hypotonia, developmental delay, persistent lactic acidosis, seizures, and ataxia died of aspiration pneumonia at age 15 months. Analysis of mtDNA was positive for the 8993T-G mutation. The proportion of mutant genomes was estimated at approximately 95%. Light microscopic examination of the left eye revealed thinning of the nerve fiber and ganglion cell layers in the nasal macula and mild atrophy of the temporal optic nerve. Electron microscopy of the right eye showed numerous distended mitochondria in all cells, particularly in the retinal pigment epithelium, nonpigmented ciliary epithelium, and corneal endothelium. By transferring NARP mutant mtDNA (8993G-T in the MTATP6 gene) from fetal fibroblasts to lung carcinoma and osteosarcoma cells lacking endogenous mtDNA by cell-cytoplast fusion, Nijtmans et al. (2001) created mitochondrial transformant cells, or cybrids, able to grow in the absence of uridine. Immunoblot analysis revealed an abnormal amount of subcomplexes, F1-ATPase and V*, of mitochondrial ATP synthase. The cybrids had decreased subcomplex V assembly and decreased ATP synthesis capacity. However, the cells had no marked phenotype, suggesting that the effects of this mutation are subtle and have no effect on cell viability. Geromel et al. (2001) investigated the oxidative stress resulting from the NARP mutation in MTATP6, using cultured skin fibroblasts from 2 NARP patients presenting with an isolated complex V deficiency. A huge induction of the superoxide dismutase (147450 and 147460) activity was observed in these fibroblasts harboring more than 90% of mutant mitochondrial DNA. The oxidative stress denoted by the high SOD activity was associated with increased cell death. In glucose-rich medium, apoptosis appeared as the main cell death process associated with complex V deficiency. Complex V-deficient fibroblasts were successfully rescued by perfluoro-tris-phenyl nitrone, an antioxidant spin-trap molecule. The authors hypothesized that the superoxide production associated with the ATPase deficiency triggered by the NARP mutation could be sufficient to override cell antioxidant defenses and to result in cell commitment to die. Porto et al. (2001) reported an otherwise healthy 42-year-old woman with isolated late-onset cone-rod dystrophy characterized by difficulty driving at night beginning at age 40 years with deterioration of central and color vision due to the T8993G mitochondrial mutation. Two of her sons had NARP syndrome. A third son who was clinically diagnosed with Leigh syndrome died at age 4 years, prior to the recognition of the T8993G mutation in this family. The mother's mutation load was 50% T8993G mtDNA, while her sons with NARP had 75% T8993G mtDNA. The authors stated that Leigh disease is related to extreme heteroplasmy (more than 90%). They felt this family illustrated the remarkably variable expression of retinal and systemic manifestations related to the T8993G mutation, ranging from an isolated late-onset cone-rod dystrophy to a severe neurodegenerative process with a dramatic outcome. Porto et al. (2001) recommended genetic counseling for retinal dystrophy patients and emphasized careful evaluation of the family medical history. The 8993T-G mutation in MTATP6 impairs mitochondrial ATP synthesis. To overcome the biochemical defect, Manfredi et al. (2002) expressed wildtype ATPase 6 protein allotopically. The protein was derived from nucleus-transfected constructs encoding an amino-terminal mitochondrial targeting signal appended to a recoded ATPase 6 gene (made compatible with the universal genetic code) that also contained a carboxy-terminal fluorescent epitope tag. After transfection of human cells, the precursor polypeptide was expressed, imported into and processed within mitochondria, and incorporated into complex V. Allotopic expression of stably transfected constructs in cytoplasmic hybrids (cybrids) homoplasmic with respect to the 8993T-G mutation showed a significantly improved recovery after growth in selective medium as well as a significant increase in ATP synthesis. This was said to be the first successful demonstration of allotopic expression of an mtDNA-encoded polypeptide in mammalian cells and could form the basis of a genetic approach to treatment of a number of human mitochondrial disorders. Srivastava and Moraes (2001) showed that a mitochondrially targeted PstI restriction endonuclease degraded mtDNA harboring PstI sites, in some cases leading to a complete loss of mitochondrial genomes. When expressed in a heteroplasmic rodent cell line, containing 1 mtDNA haplotype with 2 sites for PstI and another haplotype having none, the mitochondrial PstI caused a significant shift in heteroplasmy, with an accumulation of the mtDNA haplotype lacking PstI sites. These experiments provided proof of the principle that restriction endonucleases may be feasible tools for genetic therapy of a subgroup of mitochondrial disorders. Patients harboring the T8993G mutation are potential candidates, since the mutation creates a novel PstI site which is not present in wildtype human mtDNA. In 6 individuals from 3 unrelated Italian families who had the 8993T-G mutation, Carelli et al. (2002) showed a close relationship between extent of tissue heteroplasmy, expression of the biochemical defect in platelets, and clinical involvement. A defect of ATP synthesis was evident even at low levels of mutant heteroplasmy (10 to 34% of normal) in the absence of clinical symptoms. ATP synthesis was severely decreased (4 to 9% of control values) in patients with high levels of mutation (greater than 80%), who showed the more severe clinical phenotypes of NARP and Leigh syndromes. No biochemical threshold effect was found. Carelli et al. (2002) noted that the combined effect of decreased ATP synthesis and increased reactive oxygen species production underlie the pathophysiology of mitochondrial diseases. Mattiazzi et al. (2004) showed that the 8993T-G mutation inhibits oxidative phosphorylation and results in enhanced free radical production. Antioxidants restored respiration and partially rescued ATP synthesis in cells harboring the T8993G mutation. The authors hypothesized that free radicals may play an important role in the pathogenesis of NARP/MILS and that antioxidants may be considered as a potentially useful tool in its treatment. Jung et al. (2007) reported a family with the 8993T-G mutation in which adult-onset progressive myoclonic epilepsy was a prominent feature. The proband was a 46-year-old woman with myoclonus, epilepsy, ataxia, and peripheral neuropathy. She had onset of myoclonus at age 19, which progressively worsened over her life. She did not have retinitis pigmentosa. Her mother had possible epilepsy, and 1 of her daughters developed epilepsy and ataxia in her late teens. There was a history of 3 infantile deaths on the maternal side, resulting from seizures in 2. Genetic analysis identified heteroplasmy for the 8993T-G mutation in the proband (80% in fibroblasts) and her daughter (60% in lymphocytes). Sgarbi et al. (2009) demonstrated that human fibroblasts containing the NARP-associated 8993T-G mutation could be protected from cell death when treated with alpha-ketoglutarate/aspartate to boost mitochondrial substrate-level phosphorylation (70% vs 5%; treated vs untreated survival after 72 hours). Homoplasmic 8993T-G cybrids showed similar results (75% vs 15%; treated vs untreated survival after 72 hours). In untreated fibroblasts and cybrids, the decrease in ATP content paralleled cell death, but ATP content returned to control levels after treatment. The findings indicated that ATP synthase-deficient cells can be rescued by increasing mitochondrial substrate-level phosphorylation, suggesting a potential therapeutic option for patients with such disorders. (less)
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Likely pathogenic
(Jun 01, 2022)
|
no assertion criteria provided
Method: provider interpretation
|
NARP syndrome
Affected status: yes
Allele origin:
maternal
|
Solve-RD Consortium
Accession: SCV005199969.1
First in ClinVar: Oct 26, 2024 Last updated: Oct 26, 2024
Comment:
Variant identified during reanalysis of unsolved cases by the Solve-RD project. The Solve-RD project has received funding from the European Union’s Horizon 2020 research and … (more)
Variant identified during reanalysis of unsolved cases by the Solve-RD project. The Solve-RD project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 779257. (less)
|
Comment:
Variant confirmed as disease-causing by referring clinical team
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Pathogenic
(May 22, 2017)
|
no assertion criteria provided
Method: clinical testing
|
Mitochondrial disease
Affected status: yes
Allele origin:
germline
|
Wellcome Centre for Mitochondrial Research, Newcastle University
Accession: SCV000577899.1
First in ClinVar: Jul 17, 2017 Last updated: Jul 17, 2017 |
Number of individuals with the variant: 1
Sex: male
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not provided
(-)
|
no classification provided
Method: literature only
|
Leigh syndrome
Affected status: unknown
Allele origin:
germline
|
GeneReviews
Accession: SCV000188893.5
First in ClinVar: Sep 09, 2014 Last updated: Oct 01, 2022 |
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Germline Functional Evidence
There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
HelpTitle | Author | Journal | Year | Link |
---|---|---|---|---|
Mitochondrial DNA-Associated Leigh Syndrome Spectrum. | Adam MP | - | 2024 | PMID: 20301352 |
The diagnostic utility of genome sequencing in a pediatric cohort with suspected mitochondrial disease. | Riley LG | Genetics in medicine : official journal of the American College of Medical Genetics | 2020 | PMID: 32313153 |
Novel insights into the functional metabolic impact of an apparent de novo m.8993T>G variant in the MT-ATP6 gene associated with maternally inherited form of Leigh Syndrome. | Uittenbogaard M | Molecular genetics and metabolism | 2018 | PMID: 29602698 |
De novo mtDNA point mutations are common and have a low recurrence risk. | Sallevelt SC | Journal of medical genetics | 2017 | PMID: 27450679 |
Molecular diagnostic experience of whole-exome sequencing in adult patients. | Posey JE | Genetics in medicine : official journal of the American College of Medical Genetics | 2016 | PMID: 26633545 |
Mitochondrial DNA background modifies the bioenergetics of NARP/MILS ATP6 mutant cells. | D'Aurelio M | Human molecular genetics | 2010 | PMID: 19875463 |
Human NARP mitochondrial mutation metabolism corrected with alpha-ketoglutarate/aspartate: a potential new therapy. | Sgarbi G | Archives of neurology | 2009 | PMID: 19667215 |
NARP mitochondriopathy: an unusual cause of progressive myoclonic epilepsy. | Jung J | Neurology | 2007 | PMID: 17452590 |
The mtDNA T8993G (NARP) mutation results in an impairment of oxidative phosphorylation that can be improved by antioxidants. | Mattiazzi M | Human molecular genetics | 2004 | PMID: 14998933 |
Rescue of a deficiency in ATP synthesis by transfer of MTATP6, a mitochondrial DNA-encoded gene, to the nucleus. | Manfredi G | Nature genetics | 2002 | PMID: 11925565 |
Biochemical-clinical correlation in patients with different loads of the mitochondrial DNA T8993G mutation. | Carelli V | Archives of neurology | 2002 | PMID: 11843698 |
Manipulating mitochondrial DNA heteroplasmy by a mitochondrially targeted restriction endonuclease. | Srivastava S | Human molecular genetics | 2001 | PMID: 11751691 |
Isolated late-onset cone-rod dystrophy revealing a familial neurogenic muscle weakness, ataxia, and retinitis pigmentosa syndrome with the T8993G mitochondrial mutation. | Porto FB | American journal of ophthalmology | 2001 | PMID: 11730668 |
Superoxide-induced massive apoptosis in cultured skin fibroblasts harboring the neurogenic ataxia retinitis pigmentosa (NARP) mutation in the ATPase-6 gene of the mitochondrial DNA. | Geromel V | Human molecular genetics | 2001 | PMID: 11371515 |
Impaired ATP synthase assembly associated with a mutation in the human ATP synthase subunit 6 gene. | Nijtmans LG | The Journal of biological chemistry | 2001 | PMID: 11076946 |
Ocular histopathologic study of a patient with the T 8993-G point mutation in Leigh's syndrome. | Hayashi N | Ophthalmology | 2000 | PMID: 10889120 |
Retinopathy of NARP syndrome. | Kerrison JB | Archives of ophthalmology (Chicago, Ill. : 1960) | 2000 | PMID: 10676807 |
Catalytic activities of mitochondrial ATP synthase in patients with mitochondrial DNA T8993G mutation in the ATPase 6 gene encoding subunit a. | Baracca A | The Journal of biological chemistry | 2000 | PMID: 10660580 |
Two cases of prenatal analysis for the pathogenic T to G substitution at nucleotide 8993 in mitochondrial DNA. | White SL | Prenatal diagnosis | 1999 | PMID: 10590437 |
Mutations at specific atp6 codons which cause human mitochondrial diseases also lead to male sterility in a plant. | Kempken F | FEBS letters | 1998 | PMID: 9883875 |
De novo mtDNA nt 8993 (T-->G) mutation resulting in Leigh syndrome. | Takahashi S | American journal of human genetics | 1998 | PMID: 9556461 |
Segregation of the G8993 mutant mitochondrial DNA through generations and embryonic tissues in a family at risk of Leigh syndrome. | Ferlin T | The Journal of pediatrics | 1997 | PMID: 9329425 |
Mitochondrial disease associated with the T8993G mutation of the mitochondrial ATPase 6 gene: a clinical, biochemical, and molecular study in six families. | Uziel G | Journal of neurology, neurosurgery, and psychiatry | 1997 | PMID: 9221962 |
Skewed segregation of the mtDNA nt 8993 (T-->G) mutation in human oocytes. | Blok RB | American journal of human genetics | 1997 | PMID: 9199572 |
Leigh syndrome and hypertrophic cardiomyopathy in an infant with a mitochondrial DNA point mutation (T8993G). | Pastores GM | American journal of medical genetics | 1994 | PMID: 8042671 |
A second missense mutation in the mitochondrial ATPase 6 gene in Leigh's syndrome. | de Vries DD | Annals of neurology | 1993 | PMID: 8395787 |
The mutation at nt 8993 of mitochondrial DNA is a common cause of Leigh's syndrome. | Santorelli FM | Annals of neurology | 1993 | PMID: 8250532 |
Maternally inherited Leigh syndrome. | Ciafaloni E | The Journal of pediatrics | 1993 | PMID: 8095070 |
Heteroplasmic mtDNA mutation (T----G) at 8993 can cause Leigh disease when the percentage of abnormal mtDNA is high. | Tatuch Y | American journal of human genetics | 1992 | PMID: 1550128 |
Prenatal diagnosis of mitochondrial DNA8993 T----G disease. | Harding AE | American journal of human genetics | 1992 | PMID: 1539598 |
Subacute necrotizing encephalopathy: oxidative phosphorylation defects and the ATPase 6 point mutation. | Shoffner JM | Neurology | 1992 | PMID: 1436530 |
A new mitochondrial disease associated with mitochondrial DNA heteroplasmy. | Holt IJ | American journal of human genetics | 1990 | PMID: 2137962 |
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Text-mined citations for rs199476133 ...
HelpRecord last updated Nov 25, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.