3KQI


Conserved Protein Domain Family
PHD_PHF2

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cd15641: PHD_PHF2 
Click on image for an interactive view with Cn3D
PHD finger found in lysine-specific demethylase PHF2
PHF2, also termed GRC5, or PHD finger protein 2, is a histone lysine demethylase ubiquitously expressed in various tissues. It contains a plant homeodomain (PHD) finger and a JmjC domain and plays an important role in adipogenesis. The PHD finger domain can recognize trimethylated histone H3 lysine 4 (H3K4me3). PHF2 also has dimethylated histone H3 lysine 9(H3K9me2) demethylase activity and acts as a coactivator of several metabolism-related transcription factors. Moreover, it can demethylate ARID5B and further forms a complex with demethylated ARD5B to bind the promoter regions of target genes. The overexpression of PHF2 is involved in the progression of esophageal squamous cell carcinoma (ESCC).
Statistics
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PSSM-Id: 277111
Aligned: 3 rows
Threshold Bit Score: 94.3143
Created: 17-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitehistone H3
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       # #            #  #    #  #               #  #   
3KQI_A      12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61   human
Q6P949       7 YCICRLPYDVTQFMIECDACKDWFHGSCVGVDEDEAPDIDIYHCPNCEKT 56   zebrafish
XP_414324    7 YCICRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 56   chicken

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