2J68


Conserved Protein Domain Family
DLP_2

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cd09912: DLP_2 
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Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner.
Statistics
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PSSM-Id: 206739
Aligned: 77 rows
Threshold Bit Score: 123.811
Created: 28-Feb-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Structure:2J68: Nostoc punctiforme Dynamin-like protein (BDLP) bound to GDP; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #######                                                                 
2J68_A         70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTav-lTVLRYGpekkvtihfndgkspqqldfqnfkykytid------ 142  Nostoc puncti...
Q8EQJ8        624 YTIALFGAFSAGKSSFANALIGEEVLPVSPNPTTa---AVNRIRpvqepyehgqvvvsvkseaamiediqritkayrppe 700  Oceanobacillu...
Q9KC74         36 YDLAFCGHYSAGKSTILNRLIGAEVLPTSPIPTSa---NIIKIAqgplglkveknngelstftgeipw------------ 100  Bacillus halo...
P54159        613 FTLALFGGFSSGKSSFANALVGERVLPSSPTPTTa---TINKITkpingnlnktanvvfkteddltaeilqltgipkepa 689  Bacillus subt...
YP_175552      29 FRLAFSGHFSAGKSTLLNELLGAPLLPTSPIPTSan-qVIIGQGdirvvlekasgeeenwqgaidwd------------- 94   Bacillus clau...
Q9LCQ8         47 LTIAFCGHFSAGKSSLINSLCGKTVLPSGPVPTSa---NVVSIRhgrsralihparsaenpepeiveas----------- 112  Paenibacillus...
Q81FL0         44 LMIAFCGHFSAGKSTIMNHLYKAQLLPTSPIPTSa---NVVKIEkgmdrvvvtvksgeqyeydgaysa------------ 108  Bacillus cere...
YP_003011221   44 LTVAFCGHFSAGKSTLVNRLCGAQLLPSSPIPTSa---NVVAIRggetakasvvsvkngehvsvdipl------------ 108  Paenibacillus...
Q99U47         41 YTCSFVGHFSAGKSTLINLLIEQDILPSSPVPTTsn-tAIVSVSdnhdiianlpnqtyaklsnyde-------------- 105  Staphylococcu...
CAZ86516      192 SKVLVTGDLNAGKSTFCNALLRKKVLPEDQQPCTsifcEVLDARdnasveefhaipidgpaynrndestydvyple---- 267  Perigord truffle
Feature 1                                                                                         
2J68_A        143 -------------------------------------------------paeakkleqekkqafpdvdyavveypltlLQ 173  Nostoc puncti...
Q8EQJ8        701 gtleelmewvdkkaitkdenlqrmyrsylaaiesgyqqmkdylgsekmitlqefssfvteeskacfikemdlyydcgiTQ 780  Oceanobacillu...
Q9KC74        101 ------------------------------------------------------dqvrewgmngeeissltltlplpfLN 126  Bacillus halo...
P54159        690 grsftekwekavkknrlqee--hvklisnfllayekyqqyiqeqkkltiplselkpyvaeettacavkevtvyytcplTE 767  Bacillus subt...
YP_175552      95 -------------------------------------------------------avkrsgmdgtkikrlriyapipfLK 119  Bacillus clau...
Q9LCQ8        113 -----------------------------------------------------lselaeycknggayesvevwedipiLS 139  Paenibacillus...
Q81FL0        109 ------------------------------------------------------eelkqickdgdevigvhiyrndapIP 134  Bacillus cere...
YP_003011221  109 ------------------------------------------------------eqldayckdgeniesvsiyyptdrLG 134  Paenibacillus...
Q99U47        106 --------------------------------------------------------vremnrqnvdvesveinfqsakFE 129  Staphylococcu...
CAZ86516      268 ----------------------------------------------kleeiviendkysqakiyvedarsvdqsllrnGV 301  Perigord truffle
Feature 1                  #                                                           ## #       
2J68_A        174 KGIEIVDSPGLNDtea-rneLSLGYVNNCHAILFVMRASQPCTLGERRYLENYikg----rglTVFFLVNAWDQVRESLi 248  Nostoc puncti...
Q8EQJ8        781 QGITLVDTPGADSinarhtnVSFEYIKHADAILYVTYYNHALSRADKDFLMQLgrvkdvfeldKMFFIVNASDLAVDQTe 860  Oceanobacillu...
Q9KC74        127 ETSCIFDTPGVDStdpthqaVTTEQLYTTDGIVYVMDYNHVQSETNLYFLKQLsde-----kkPIVIVINQIDKHDEQEv 201  Bacillus halo...
P54159        768 KGITIVDTPGASSmnkrhteLAFQYIKDADAFFYMTYYQHSFSKGDRSFLRKLglvkeslsmdKMFFIINAADLAKDKTe 847  Bacillus subt...
YP_175552     120 HGSELMDTPGVDStdpthqrVTLDALYTTDAIVFVMDYNHVKAETNLYFLKQLste-----gkPLFLVINQIDKHEEGEl 194  Bacillus clau...
Q9LCQ8        140 GGGVLLDTPGVDStdhghamATHSALHWADIVFYVMDYNHVQSENNLSFAKSLsdw-----gkPLYLIINQIDKHREREl 214  Paenibacillus...
Q81FL0        135 EGVMLVDTPGIDStddahqlATESTLHLADVIFYMMDYNHVQSEVNLQFVKELkqr-----nkTVYLVVNQIDKHKENEl 209  Bacillus cere...
YP_003011221  135 DHTVLLDTPGIDStddahrmSTESALHLADVVFYVMDYNHVQSEINFAFAKQLkdw-----gkPLYFIVNQIDKHRDREl 209  Paenibacillus...
Q99U47        130 NGFTLQDTPGVDSnvashqsITEQYMYTSNMIFYTVDYNHVQSELNFKFMKHIndv-----giPVVFIINQIDKHQDDEl 204  Staphylococcu...
CAZ86516      302 VDIALIDAPGLNLdsl-kttAVFARQEEIDVVVFVLSAENHFTLSAKEFIWDAare-----kaYIFIVVNRFDNIRDKAr 375  Perigord truffle
Feature 1                                                     ###                                 
2J68_A        249 dpddveelqasenrlrqv--fnanlaeyctvegqniydeRVFELSSIQALRRRlknpqad-------------------- 306  Nostoc puncti...
Q8EQJ8        861 lalvtnyvee-------------------qllqlgirhpRLYPVSSKLSLKEKrakepl--------------------- 900  Oceanobacillu...
Q9KC74        202 pfatfdqsvk------------------dvfkkwgiefeTIYYTSMKVANHPLnqfstfaedvkkrlyysdslipfakqr 263  Bacillus halo...
P54159        848 letvtdyvsa-------------------elvkegvyepQLFTVSSKEELVGKpesfy---------------------- 886  Bacillus subt...
YP_175552     195 sfaayresie------------------stlkewgiryvTIYYTSMKKTGIPEne------------------------- 231  Bacillus clau...
Q9LCQ8        215 sfsryrneve------------------ssfhawqvhytDILFTSLKEQNHPWnqweqltclipk-----------ller 265  Paenibacillus...
Q81FL0        210 sfenykdsvk------------------qsfsnwdievdGVYYTSLRMMNHPHne------------------------- 246  Bacillus cere...
YP_003011221  210 s-------------------------------------fEQYRKSVEEAFQAWhlepagivyls------------lrqp 240  Paenibacillus...
Q99U47        205 sfstfksrveksiadwgiklertfyvskfdhpenelevlSSYLISLDQHRETIedytsrtve-----------------y 267  Staphylococcu...
CAZ86516      376 cqrlileqvas-----------------lsprthqdakeLVHFVSSNAVIDGDdaakc---------------------- 416  Perigord truffle
Feature 1                          
2J68_A        307 ldgtgfpKFMDSLNTFL 323  Nostoc punctiforme
Q8EQJ8        901 --ndemmKLEESFYSFI 915  Oceanobacillus iheyensis
Q9KC74        264 lwqsfyyGIERRLRDEL 280  Bacillus halodurans
P54159        887 ---nqfsKVRKHLDRFI 900  Bacillus subtilis
YP_175552     232 -----lvRFKQEMKALL 243  Bacillus clausii KSM-K16
Q9LCQ8        266 kaellaySLVSSMHHLV 282  Paenibacillus polymyxa
Q81FL0        247 -----irSLEALITSIM 258  Bacillus cereus ATCC 14579
YP_003011221  241 dhphqewEQLELLLSQL 257  Paenibacillus sp. JDR-2
Q99U47        268 iteaqldYIQSEIQEVL 284  Staphylococcus aureus subsp. aureus Mu50
CAZ86516      417 ---qefdKLEQSLRRFV 430  Perigord truffle

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