1VC9,3FJY,3I7U,3I7U,1VC8,3FJY,5GG5


Conserved Protein Domain Family
NUDIX_Ap6A_hydrolase

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cd03673: NUDIX_Ap6A_hydrolase 
diadenosine hexaphosphate (Ap6A) hydrolase
Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the NUDIX hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the NUDIX hydrolase superfamily are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Statistics
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PSSM-Id: 467541
Aligned: 141 rows
Threshold Bit Score: 102.247
Created: 28-Mar-2006
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1VC9: Thermus thermophilus Ap6A hydrolase binds Mg2+ and ATP, contacts at 4A
  • Comment:Ap6A (2x ATP) is the preferred substrate, although Ap6A hydrolase also hydrolyzes Ap5A (ATP +ADP), Ap4A (ATP + AMP), and p4A (ATP + Pi).
  • Comment:Mg2+, Mn2+, Zn2+, and Co2+ activated Thermus thermophilus Ap6A hydrolase, but Cu2+, Ca2+, and Ni2+ did not.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           # #     #    # #             #                    # ##    
1VC9_A      2 ELGAGGVVFNak---rEVLLLRDRMg----FWVFPKGHPEPGESLEEAAVREVWEQTGVRAEVLl-PLYPTRYVNPk--- 70  Thermus thermophilus
EAW35616   21 SISAGGVVIRqqneqmYIAVVQENQnr--pGYVLPKGRIEPGETIEQAARREIEEEAGLNDLHKvaELGSKERLSYs--- 95  Lyngbya sp. PCC 8106
AEV70435    4 RSFAGGVVFSg----nKVLLRKCED-----GWVLPREQLRDGELPNEVALNKISQESGIQAEIIs-NAGQTSYECTyfpm 73  Clostridium clarif...
EHR36088    3 EHSAGGVVIKn----gKVLLLRKYYg----DWVLPKGKMETDETTAITAMREVSEETGIKAEIVs-KVGYARYYYYnhn- 72  Helcococcus kunzii...
AAM24364    4 RECAGGVVFKg----dSVFILKNEKg----EWVLPKGVIRNNELPIDVAIRRVCAETGLKSVEVlsTAGETSYEFYsvt- 74  Thermoanaerobacter...
EDR99024    4 ATSCGGVVIYr----gKILLLYKSYknrydGWVLPKGTVEKGETHEQTALREVKEETDANARIIk-YVGKSEYSFYsf-- 76  Anaerostipes cacca...
ABN53287    4 RSFAGGVVFSg----dKVLLFKNERn----EWMLPRGKMHDGEISSEAAVRRIMEESGIATEIIy-TAGQTNYEFSstt- 73  Clostridium thermo...
EDP24483    9 EVSAGGVVIHn----gEFLLLKKFSn----EWVLPKGRLENNETKELAAIREVQEESGIHAEIVk-YLGFVKYDYQhnd- 78  Parvimonas micra A...
ADY26023   15 QHGAGGVVFSda---gQVLLVQCRSs----GWTFPKARLEPGEAPAHTATRGILQQTGIEAAELd-WLPPTSHTSAr--- 83  Deinococcus proteo...
EFM64629    4 RRCSGGVVFYa----nKVLLVENDKg----EWTLPKGKIIGDGLPHESAIDRVKFETGVDAKILd-IAGDTIYEFFsrs- 73  Peptostreptococcus...
Feature 1            #                                            # #          
1VC9_A     71 ----GVEREVHWFLMRGEgapr------leeGMTGAGWFSPEEARALLA---FPEDLGLLEVALE 122 Thermus thermophilus
EAW35616   96 ---kTMWKKTHYFLFTTNqiegt---ptdlyKPYKLFWLPLNEFQSWFWpeqRELIADHLDLIRQ 154 Lyngbya sp. PCC 8106
AEV70435   74 trqtPFLNKVTWYIMKSRndkv-----neenIKNNSAFVNVEEAMNLMK---YNQDKSLVNLSFT 130 Clostridium clariflavum DSM 19732
EHR36088   73 --seKVSKRVDYYLMRFKggeli---pqkeeGFAVAEFVDYDRAVDILK---HDSEKNMVMNAMR 129 Helcococcus kunzii ATCC 51366
AAM24364   75 -rqrPVFNKITWYLMTTSeeefn---iskedGFVDGGFFPIDKALDMIT---YSQDKSLVNVSYF 132 Thermoanaerobacter tengcongensis MB4
EDR99024   77 --heQIVKSVHWYLMEAEgyhsk---pqkeeFFVDSGYYKFHEAYHLLK---FPNEKEILKEAYE 133 Anaerostipes caccae DSM 14662
ABN53287   74 -hkkPFCNKTTWYIMKSLdeenkimkirrknSSRFMDFVKVDEAMNLIN---SGHDRSLVSLSYR 134 Clostridium thermocellum ATCC 27405
EDP24483   79 --geKVKKTVHYFYMEPEdlnli---pqreeGFVEAIFLPYDKAVKLVK---HDAERNMLKSANY 135 Parvimonas micra ATCC 33270
ADY26023   84 ----GERHVTDWFLMKALseem-----qlkdPVYGDGFYPVREAAGRLD---LTEDLQLLWQAEE 136 Deinococcus proteolyticus MRP
EFM64629   74 -rnqRVCNAIMWYVMESPnqev-----kltgEFLGGGFYKVSEALEMLT---HSKEKSLVDVSYK 129 Peptostreptococcus stomatis DSM 1...

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