5CIU,3FLG,1KHC


Conserved Protein Domain Family
PWWP_DNMT3B

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cd20155: PWWP_DNMT3B 
Click on image for an interactive view with Cn3D
PWWP domain found in DNA (cytosine-5)-methyltransferase 3B (DNMT3B)
DNMT3B, also called DNA methyltransferase HsaIIIB, DNA MTase HsaIIIB, or M.HsaIIIB, is required for genome-wide de novo methylation and is essential for the establishment of DNA methylation patterns during development. It may preferentially methylate nucleosomal DNA within the nucleosome core region. DNMT3B may function as a transcriptional co-repressor by associating with CBX4 and independently of DNA methylation. In tumorigenesis, DNA methylation by DNMT3B is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of DNMT3B has been identified in patients with ICF (immunodeficiency, centromeric instability, and facial anomalies) syndrome, a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA.
Statistics
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PSSM-Id: 438983
Aligned: 10 rows
Threshold Bit Score: 218.585
Created: 9-Jan-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
methyl-histonePWWP sequence
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:methyl-histone binding site [polypeptide binding site]
Evidence:
  • Structure:5CIU; Homo sapiens DNMT3B in complex with H3k36me3, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  # #  #           #           #  # ###                                 
5CIU_A        19 GIGDLVWGKIKGFSWWPAMVVSWKATSKRqamsGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFnkLVSYRKAMY 98  human
3FLG_A        20 GIGDLVWGKIKGFSWWPAMVVSWKATSKRqamsGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFnkLVSYRKAMY 99  human
Q9UBC3       224 GIGDLVWGKIKGFSWWPAMVVSWKATSKRqamsGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFnkLVSYRKAMY 303 human
1KHC_A        13 GIGDLVWGKIKGFSWWPAMVVSWKATSKRqampGMRWVQWFGDGKFSEISADKLVALGLFSQHFNLATFnkLVSYRKAMY 92  house mouse
BAD99024     238 GIGELVWGKIKGFSWWPAIVVSYRATSKRqavsGMRWVQWFGDGKFSEVSADKLVGLMAFRQHFNTATFnkLVSYRRAIY 317 chicken
XP_029467196 125 GIGELVWGKMKGFSWWPAMVVSWKLTGKRqasaGMRCLQWFGDGKFSEVSTDRLVSLSDFSQYFNASTLkkLISYRRALY 204 two-lined caeci...
AAI24099     204 GIGELVWGKIKGFSWWPGMVVTWRATGRRqashGMRWLQWFGDGKFSEVSADKLDSITAFPKFFNQSSYtkLASYRRAIF 283 zebrafish
XP_007883119 193 GLGELVWGKIKGFSWWPAIVVSWRVPGKRlaisGMRWLQWFGDGKFSEVSTDKLVPLTAFSQYFHSSAYnkLVSYKRAVY 272 elephant shark
XP_014350916 215 GLGELVWGKIKGFNWWPAIVVTWRAPAKRratsGMRWLRWFGDGKYSEVSVDKLGPLMSFSQYFNSSALk-WNSYKKAVY 293 coelacanth
XP_018945992 100 GIGELVWGKIKGFSWWPGMVVTWRATGKRqashGMRWLQWFGDGKFSEVSADKLDSITAFPKFFNQSSYtkILSCLIVTV 179 common carp
Feature 1                                             
5CIU_A        99 HALEKARVRAGKTFpsspgdsLEDQLKPMLEWAHGGF 135 human
3FLG_A       100 HALEKARVRAGKTFpsspgdsLEDQLKPMLEWAHGGF 136 human
Q9UBC3       304 HALEKARVRAGKTFpsspgdsLEDQLKPMLEWAHGGF 340 human
1KHC_A        93 HTLEKARVRAGKTFssspgesLEDQLKPMLEWAHGGF 129 house mouse
BAD99024     318 HALEVARSRSGKTFtsapgesLEEQLKPMIDWALTGF 354 chicken
XP_029467196 205 QALEVARTRAGKSFsdaavesLEGKLKPMLDWAFGGF 241 two-lined caecilian
AAI24099     284 QALEVASLRAEKTFppseadsLEEQVKPMLDWAHGGF 320 zebrafish
XP_007883119 273 QSLEIASTRSEMTFpsnerstLEDSIKPMLDWAFGGF 309 elephant shark
XP_014350916 294 EALEVASKRAGKEFpeencesLEQRLKSMMEWALGGF 330 coelacanth
XP_018945992 180 SNISLLVSLPAEYCvf----pLASESSALLDSSPPEF 212 common carp

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