3F2U,1AP0,1GUW


Conserved Protein Domain Family
CD_HP1beta_Cbx1

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cd18650: CD_HP1beta_Cbx1 
Click on image for an interactive view with Cn3D
chromodomain of heterochromatin protein 1 homolog beta
CHRomatin Organization Modifier (chromo) domain of heterochromatin protein 1 homolog beta (also known as HP1beta, CBX1, and chromobox 1), and related proteins. HP1beta is a highly conserved non-histone protein, which is a member of the heterochromatin protein family, and is enriched in the heterochromatin and associated with centromeres. HP1 has two conserved protein-protein interaction domains, a single N-terminal chromodomain (CD) which can bind to histone proteins via methylated lysine residues, and a related C-terminal chromo shadow domain (CSD) which is responsible for the homodimerization and interaction with a number of chromatin-associated non-histone proteins; a flexible hinge region separates the CD and CSD and may bind nucleic acid. HP1 is a highly conserved non-histone chromosomal protein that is evolutionarily conserved from fission yeast to plants and animals. There are three human homologs of HP1 proteins: HP1alpha (also known as Cbx5), HP1beta, and HP1gamma (also known as Cbx3).
Statistics
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PSSM-Id: 349297
Aligned: 15 rows
Threshold Bit Score: 93.0851
Created: 5-Dec-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide bindingN-methyl group
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:1GUW; mouse Hp1beta chromodomain binds the lysine 9-methyl histone H3 N-terminal peptide, contacts at 4A
  • Citation:PMID 9171360
  • Comment:induced-fit mechanism: the flexible N-terminal tail moves closer in the peptide-bound state

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ####                # ## #   # # ##  #### ##      
3F2U_A         2 EYVVEKVLDRRVVkGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 51  human
1GUW_A        13 EYVVEKVLDRRVVkGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 62  house mouse
NP_001193344  20 EYVVEKVLDRRVVkGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69  cattle
XP_022598202  44 EYVVEKVLNRRVVkGRVEYLLKWKGFSDEDNTWEPEDNLDCPDLIAEFLQ 93  greater amberjack
JAO77118      43 EYVVEKVLNRRVVkGKVEYLLKWKGFSNEDNTWEPEENLDCPDLIAEYLQ 92  blackstripe livebearer
XP_022524644  53 EYVVEKVLDRRIVkGRVEYLLKWKGFTDEDNTWEPEENLDCPDLIAEYLQ 102 Mexican tetra
XP_022278769  20 EYVVEKVLDRRVVkGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69  dog
XP_003912717  20 EYVVEKVLDRRVVkGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69  olive baboon
XP_021420678  23 EYVVEKVLNRRVVkGRVEYLLKWKGFSDDDNTWEPEDNLDCPDLIAQFLQ 72  rainbow trout
NP_001017150  20 EYVVEKVLDRRVVkGKVEYLLKWKGFSDDDNTWEPEENLDCPDLIAEFLQ 69  tropical clawed frog

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