1EKF,1ET0,3DAA,1I1K,1I1L


Conserved Protein Domain Family
PLPDE_IV

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cd00449: PLPDE_IV 
Click on image for an interactive view with Cn3D
PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Statistics
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PSSM-Id: 238254
Aligned: 94 rows
Threshold Bit Score: 125.792
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1:catalytic residue [active site]
Evidence:
  • Comment:pyridoxal 5'-phosphate forms an internal aldimine bond (Schiff base linkage) with the catalytic residue lysine
  • Citation:PMID 7748903

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1EKF_A       65 SSSLhYSLQLFEGMkafkg--kdqqVRLF-RPWLNMDRMLRSAMRLclp-------sfdKLELLECIRRlievdkdwvpd 134 human
3DAA_A       21 DRGYqFGDGVYEVVkv-------ynGEMF-TVNEHIDRLYASAEKIriti------pytKDKFHQLLHElvek------- 79  thermophilic bac...
NP_702446    19 DFIKlGIHGVYTTMktv-----mspEYIF-NFSLHMNNLHKYCTNYlkvqe----ndtnREHISKILKYltvediyknss 88  Plasmodium falci...
CAB41087     33 TRTInNGTSFLFWErhmkr-lsssiRILL-KSNPELLFSSGSSPRFwmnqpvpgssiydRVNGSMSEALksvvvke-ser 109 thale cress
NP_567011    33 TRTInNGTSFLFWErhmkr-lsssiRILL-KSNPELLFSSGSSPRFwmnqpvpgssiydRVNGSMSEALksvvvke-ser 109 thale cress
EAA42519     29 DVLTtAPRGAYTRFctv------hrDRIL-YLAEHVTRLRKSLLGMlddryv-elyhlsIPNMSKHRQEaedk------- 93  Giardia lamblia ...
NP_782333    22 DNIIkGEKNIYEVLkv-------knSVPL-LLEEHIKRLKSTSNLTnlk--------iwLKESFIEDSIkkl-------- 77  Clostridium teta...
ZP_00032528  31 DRGFiFGDGIYEVAplyahpahaggRTPF-RFQQHLARLARSVDRIgivn------plnDAGWRALIAQvvaaneagggl 103 Burkholderia fun...
CAD90964     22 DRGFlFGDSVYEVLpv-------yhGQPY-FVDQHLDRLFSNMKKIkmi--------ipNYDWHGLIHRlise------- 78  Legionella pneum...
ZP_00129535  39 DHLAhRGDGVFESMkf--------eGRRLyQLDAHLERMERSARGIyltp------pctQSVLRDIVLQvara------- 97  Desulfovibrio de...
Feature 1                                                                                       
1EKF_A      135 aagtSLYVRPVLIGNepslgv------sqprraLLFVILcpvgayf----pggsvtPVSLLAdpafira----wvggvgN 200 human
3DAA_A       80 nelnTGHIYFQVTRGtsprahqf---pentvkpVIIGYTkenprp-----lenlekGVKATFvedir--------wlrcD 143 thermophilic bac...
NP_702446    89 knikTGFEYLNNLQNdlknkhf----sdnsnymVMITLTwdmnstv---dtlekyySILCYIkclpkhqdhvqidmmcgE 161 Plasmodium falci...
CAB41087    110 lygeELAVTVLVTGNveklnrl-----dvgnnwDFLDVWlhigaysplgplgvgenAASLALvgrg---------rdvaA 175 thale cress
NP_567011   110 lygeELAVTVLVTGNveklnrl-----dvgnnwDFLDVWlhigaysplgplgvgenAASLALvgrg---------rdvaA 175 thale cress
EAA42519     94 fteaFLAEYMIKAADcmlkqiptgdirvdvhlsAYEPGFpmfa----------lgtPVPNQDetkdtvil-ergerrtpT 162 Giardia lamblia ...
NP_782333    78 -ikkNKVEEGSLKFIlnfeek------nficyfEETIFPnked----------fkeGISTALynee---------renpN 131 Clostridium teta...
ZP_00032528 104 ragqDAIAYIQVTRGvakrgha----fpagiqpTVFVMVtplslpd----aaqraqGVRCVTaedrr--------wlncD 167 Burkholderia fun...
CAD90964     79 nnggNLQVYIQVTRGnqgvrkhd---iptsitpSVIAFTmhnpfpt----ledkeqGMSAKLvedfr--------wmrcD 143 Legionella pneum...
ZP_00129535  98 adtpDGCIRILLGRGpggfgid----paecpvpSLYVVAysltpkp----eewyekGVTAFRtsipak------qgylaT 163 Desulfovibrio de...
Feature 1        #                                                                              
1EKF_A      201 YKLGgn-ygPTVLVQQEAlkr------------------------gcEQVLWLYgpdhQLTEVGTMNIFVYWThed---- 251 human
3DAA_A      144 IKSLnl--lGAVLAKQEAhek------------------------gcYEAILHRn--nTVTEGSSSNVFGIKD------- 188 thermophilic bac...
NP_702446   162 RKTPnikyaDVFQVRDKFlklk---------------------nensHEVVLFNes-nQITEGLSCNFFCFLN------- 212 Plasmodium falci...
CAB41087    176 AKYSdw--vRDLACGLLEfccfflnlgmvydlgrlrkplekfrppltTELLLSNdg-dHLLEGCITNFFVVCRrvkssen 252 thale cress
NP_567011   176 AKYSdw--vRLRKPLEKFrpp------------------------ltTELLLSNdg-dHLLEGCITNFFVVCRrvkssen 228 thale cress
EAA42519    163 IKDTqw--iKERKPLESFlgd------------------------tvEEVVLMDde-gYLYEGISSNFFVLLRrdd---- 211 Giardia lamblia ...
NP_782333   132 AKVLkl--dFRKSLDKFIkdk------------------------niFEAILVDrn-gFITEGSKSNIFMVKD------- 177 Clostridium teta...
ZP_00032528 168 IKSVsl--lGNVLMAQYAaen------------------------daFETIQFRd--gMLTEGSSSNVWMVKD------- 212 Burkholderia fun...
CAD90964    144 IKTTsl--iANILLNDEAvsa------------------------gfHTAILARn--gLITEGSSTNVFIVAQd------ 189 Legionella pneum...
ZP_00129535 164 IKNAny--iPNVLMKLEArsr------------------------gcDIPVSFDen-dFIAEGPTENLCLVDAd------ 210 Desulfovibrio de...
Feature 1                                                                                       
1EKF_A      252 ------gvLELVTPPLngviLPGVVRQSLLDMAQTwgefRVVERTITMKQLlralee---grvreVFGSGTAcqVCPVHR 322 human
3DAA_A      189 --------GILYTHPAnnmiLKGITRDVVIACANEin-mPVKEIPFTTHEAlkm---------deLFVTSTTseITPVIE 250 thermophilic bac...
NP_702446   213 --------NTLYTAKDel-vLKGTIREQIINLCERen-iKLKKDFIDIKDIhkf---------efSFICSTTrnILPIRK 273 Plasmodium falci...
CAB41087    253 lyggslseFEVQTAPItdgvLAGVIRDLVIEVCLSeg-iPYRERAPSWSERelw---------eeAFITRTIkvPVGSME 322 thale cress
NP_567011   229 lyggslseFEVQTAPItdgvLAGVIRDLVIEVCLSeg-iPYRERAPSWSERelweeafitsslriLQHVGTIkvPVGSME 307 thale cress
EAA42519    212 ------gaLVLQTAEDey-vLRGTIRSMVLSTAKDln-vLVEMSRPRIADInkw---------igVFITSTTrrVKPISR 274 Giardia lamblia ...
NP_782333   178 --------HKLITTPSka-vLPGITRKQVLDICNEln-iSVIEKYIGSEELeei---------dgIFISSTPfdILPIKT 238 Clostridium teta...
ZP_00032528 213 --------GVLSAPPRshkiLEGIRYGLIEELAGEcg-iRFEAREISEAELraa---------deILVSSATkeVLPVAQ 274 Burkholderia fun...
CAD90964    190 --------GVIKTPPMnnfcLPGITRQVVIEIIKKld-lKFREIEISISELfsa---------qeVWITSTTkeVFPITK 251 Legionella pneum...
ZP_00129535 211 --------GTLVVPEFtn-aLSGTTIMRVIDLVRDe--mNVAFRKVREDELyra--------aevMVLGTTTe-CVSVVS 270 Desulfovibrio de...
Feature 1                                       
1EKF_A      323 Ilykdrnlh-----iptmengPELILRFQKEL 349 human
3DAA_A      251 Idgkli----------rdgkvGEWTRKLQKQF 272 thermophilic bacterium PS3
NP_702446   274 Iilftenrk----epyemnvnHPILLKLQDKL 301 Plasmodium falciparum 3D7
CAB41087    323 GlacnkpeeiqwkekrfkerpGMITELIKVKL 354 thale cress
NP_567011   308 GlacnkpeeiqwkekrfkerpGMITELIKKAI 339 thale cress
EAA42519    275 Vfldgt----------tydfsTDEPSRFKDAI 296 Giardia lamblia ATCC 50803
NP_782333   239 Vddlkfkssk---npliisimDKYNKKIYEYI 267 Clostridium tetani E88
ZP_00032528 275 Idgqpv----------gegkpGAVFAALYAAY 296 Burkholderia fungorum
CAD90964    252 Indsli----------nggkvGEYWRIINDSY 273 Legionella pneumophila
ZP_00129535 271 Fegqpv----------gggrpGPVARRFRELL 292 Desulfovibrio desulfuricans G20

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