Conserved Protein Domain Family
PolB

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COG0417: PolB 
DNA polymerase B elongation subunit [Replication, recombination and repair]
Statistics
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PSSM-Id: 440186
Aligned: 196 rows
Threshold Bit Score: 599.891
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014587056   1 MIf-------QILDANYVYdpdGFPIVQLFGTT-PSGRPVTVQASGFRPYFYARIDErRIDSAIDGIReMGlSAEAVd-- 70  
WP_011448182  12 EKdqnkrillSICQVEYSTa-aDGPIIHIFGRT-ETGDFKEIQVTGFFPYLYILASQvTRNHPDQVIK-Idp-------- 80  
WP_083767029  27 RDi-------AIIQVEYSNt-aAGPLIHIFGRD-QQRGAVQIVVHGFRPYFYAPVAQvNQIPLPVGVE-Aeq-------- 88  
WP_013329857   6 EQepsqpvsvAINQVEYSNt-aEGSIVHILGRD-ESGKAHEIRVKGFRPYFYAPVGQvEKVPTPDSAE-Vdf-------- 74  
WP_008415633  47 veetvdlgvtqvnytveegadgEYPVVHVFGRD-DAGEAHHVRIYEFRPYFYAPSASlT-DEDLSDSR-IT-GTEe---- 118 
WP_007314150  17 RQgeeggvlvSVMQIEYTVg-pSGPVIHVFGRD-RTKEPVHVQVTGFRPYFYVPAELaAAAPPSPRAE-Vea-------- 85  
WP_015286134  21 RDir-----iAINQVEYSNs-pGGPVIHIFGRD-TRGKAVRLDVTGFRPYFYVPADQaESTPIPPQAT-Let-------- 84  
WP_020445284  50 aqgtvdlrvmqvdytiegsgsdETPIVHVFGRT-ADGEREHVRVRGFQPYFYVPVDSvDPNELATYDG-IV-DYEEg--- 123 
WP_077205258  60 tdeyvtaavtqvdytvegrgddEFPVVHIFGRTpEDNEQVHIEVYEFRPYFYAPTDSlT-DADLQRDT-IT-GWEEEddd 136 
WP_074176118   6 TLddfgktriGIHQVEYSVg-pDIPVIHVFGRD-ASGSAVKVDVTGFRPYFYAPAGQvDETPLPQDVD-Vep-------- 74  
WP_014587056  71 --RFRPvgYQRRpsKMLKVVAKDPKSVRDFRESVlsvpgvlEVYETDVLFKNRFLIDLDLGGMRWAEVEAGNGgsDLeta 148 
WP_011448182  81 -tPYTS--IHGE--ELRRLYTRRPTDVREVRGNYt-------HFEADIPFATRYLIDAGITGGISVPAGAS--------- 139 
WP_083767029  89 gtTYPS--IRGE--PLIRLYTRRPGDVREVRGDYr-------HFEADIPFATRFLIDADLRDGVRVPSCD---------- 147 
WP_013329857  75 thEYTS--IRGE--KLRRIYTRTPGDVRDVRDRYt-------HFEADILFTTRFTIDCGITGGITAPSEY---------- 133 
WP_008415633 119 --GYES--IRGE--KLTRIFGQTPRDVGNMRDRF-------DHYEADILFPNRLLIDKGINSGIRVPDRRDDD--GS--- 180 
WP_007314150  86 gkKYTS--IRGE--ELVRIYTQKPTDVREERERYr------AHFEADIPFTTRFAIDCGIRGGLFSPSPI---------- 145 
WP_015286134  85 gnTYRS--IRGE--QLRRLFTQRPTDVRDVRERYr-------HFEADIPFATRFMIDTGLTGGVAAPKEN---------- 143 
WP_020445284 124 --GFES--IRGD--DLLKIYGRTPRDVGQVRDEF-------DHYEADVLFPNRFLIDHGVESGIRVPARREDG--GAstt 188 
WP_077205258 137 gePYES--IRGE--RLTKIFGQTPRDVGQMRDEF-------DHYEADILFPNRLLIDKDITSGVRVPARREAE--GE--- 200 
WP_074176118  75 dtTYRS--IQGE--ALRRLYTRRPGDVRDVRDRY-------QHYEADIPFATRFMIDCGLTGGMELPASAT--------- 134 
WP_014587056 149 pagsatigpvpytslrpagagpavaggaerEKVPGAearggakaipnAPLRTLAFDIECLPLHgAMPSPETSPVIMVSLA 228 
WP_011448182 140 --------------------------------IVPYtdvkp--aevhAPTRYCLLDIECEDDKgGLPNPDRDRIICITAW 185 
WP_083767029 148 ---------------------------------VDFseisp--vsidVPARVCFLDIECEDER-GFPDPQRDAVICITCH 191 
WP_013329857 134 ---------------------------------ADYtdisp--cslsVSPRVCMMDIECEDLN-GFPDPNRDRINCITCW 177 
WP_008415633 181 -------------------------------VRVHHeeiep--veaeADLRVHNFDIEVDDRS-GFPEEGEEPIVCLTSH 226 
WP_007314150 146 ---------------------------------ADYrevsp--adadVPPRICMVDIECEDVR-GFPQPARDAIVCITAW 189 
WP_015286134 144 ---------------------------------IDWqeitp--iaidAPARTCIIDIECEDER-GFPDPQRDAIICITCY 187 
WP_020445284 189 gggagas-------------dggnsdgvnaPITIHHeevep--vdvlAEPRVHTLDIEVDDRS-GFPEDGEEPIVCLTTH 252 
WP_077205258 201 ------------------------------PIRVPHdeiea--vdasADPRVNTFDIEVDDRH-GFPEEGEETIVCLTSH 247 
WP_074176118 135 --------------------------------VVDYrelap--vdikAPARTCIMDIECVDER-GFPEPERDPIICVTCW 179 
WP_014587056 229 fdPPyKGREDLVLVGRdlDC---------------------PRGDVLCCGGERAMLARFVEILKDYDPDVLAGYNSAEFD 287 
WP_011448182 186 --DSfSDHYTTFLLQN--SErsineenlcr-ntlhngcfrgDIHTIRVFDDEKSLLTGFSSYIRENNPDILSGWNFTDFD 260 
WP_083767029 192 --DSyDDHYTTLLLLA--EGttapa------------dpvdPQQTLICYQTEQALFEGLIAYITEKDPDIMSGWNIVDFD 255 
WP_013329857 178 --DSyDDHYTTFFWKN--EDspfkgs----------ikpslENHTVQEFDSEKGLLMALVSYIREKDPDIMSGWNFVDFD 243 
WP_008415633 227 --DStREEYIGWLYVA--PAgdgtspadl---pdyapisedVEIEIHAFESEEAMLDAYLSYITETDPDVLTGWNVDDFD 299 
WP_007314150 190 --DSyEDKYSTFLFAP--PGtppdtgwlakvsprpsgcfdpARHEVAVFPDEKGMLQAFAAYIRKTDPDILSGWNFAEFD 265 
WP_015286134 188 --DSfDEDYTTFLFSG--SQipaavavkvkeggldngcfreGTHTICSYADEPAMLRAFTAYIIARDPDILSGWNFVDFD 263 
WP_020445284 253 --DSvRDEYVGWVFPG--EDaewggdvgd---ldydpitddAAVEVRTFESEAAMLDAYLTYVEETDPDVMTGWNFDDFD 325 
WP_077205258 248 --DSyDDEYITWLYDS--PAgidppeala----eydpieadFEADVRVFEEEEAMLEAFVDYIETTDPDLLTGWNFDDFD 319 
WP_074176118 180 --DSfDEDYTTLLWTP--GGvpgdaa----------elslnARHRVVRFPDEVAMLKGLIDYVRGRDPDILSGWNFVEFD 245 
WP_014587056 288 FPYLEERARRLN--------VEVR-VGRdgGPWRVRKIVNqtrVEITGRIVVDLLPLVRSSF--SLKRYTLRNASLELLG 356 
WP_011448182 261 LPFIFGRIRALN--------LPPDsMARl-PGMSERS-------GVRGRVDFDLLAGYKKMQssKLDSYRLDAVGEREVG 324 
WP_083767029 256 IPYLMNRMEHLT--------ITPTrLSRl-PGYTERN-------ALRGRVLFDLLAAYKKMHpsRRESYRLDAVAESELG 319 
WP_013329857 244 IPYTLGRMKNLN--------IHEDaLSRl-PGVSSRA-------PVRGRAIFDLLTAYKKMQgaRKESYRLDAIGEEELG 307 
WP_008415633 300 APYLIDRLDRLDpat--dydLSMErLSRv-NEVWRSDWQG---PNIKGRVVFDLLYAYKRTQftELDSYRLDAVAETELG 373 
WP_007314150 266 LPYLSRRMEVLS--------LPFSaLSRl-EGQTERL-------AVRGRAQFDLLLAYRKMHatQKESYRLDAVAEAELG 329 
WP_015286134 264 MPYITGRMERLG--------LKSDsLARi-PGMTERN-------ALRGRALFDLLTAYKKMHstLKESYRLDAIAMDELG 327 
WP_020445284 326 MPYVLDRLEEVGswpdvdedLSIErLSRv-DEVWRSNWGA---PDVKGRVVFDLLYAYQRTQfsELDSYRLDAVAEEELG 401 
WP_077205258 320 APYFLDRLEELQgphh-dydLSIErLSRv-DEVWRNNWQG---PNIKGRVVFDLLYAYQRTKftELDSYRLDAVGEQELG 394 
WP_074176118 246 IPYILQRMAALG--------LRGEdLARl-PGQTTRN-------AVRGRSIFDLLGAYRKMHqaQKESYRLDAVAEEELG 309 
WP_014587056 357 VEKHDV-DPKEMEALWTSSgddFARLVSYSRRDSYLALHLLTdlQLLDKYIALAQTSGSLLQDVidGGQTGMVENFLFRK 435 
WP_011448182 325 DVKAFHyQPGMTARMWNEA---PHELVEYNFKDVELCVKINQknNIIEFYQEIARYVGCPLDRT--LNSSNVIDIYILRK 399 
WP_083767029 320 ETKLRY--TGTISSLWKTD---PATLVAYNRKDVVLCTGIDQkdHIISFYREIARYVGCPLDKT--VNSSNVIDIYILRK 392 
WP_013329857 308 EGKIRY--SGTISELWIED---PQTLVDYNLKDVELCVGINKknDIIEFYQEIARYVGCPLDNT--INSSNIVDIFVLRK 380 
WP_008415633 374 VGKERY--AGDIGDLWEQD---PERLLEYNVRDVELCVEIDArqGIIPFWDEVRTFVGCKLEDA--PTPGDTVDMYVLHK 446 
WP_007314150 330 DTKVRY--RGTLSDLWTSD---PALLVEYNFKDVALCVGINGknRIIEFYREIARYVGCPLEKT--LNSSNVIDIFVLRK 402 
WP_015286134 328 QQKVRY--TGTISDLWKKE---PALLVEYNFKDVELCVGINKkdNIIGFYREIARYVGCPLDKT--LNSSSVIDVYVLRK 400 
WP_020445284 402 VGKERY--TGDLGDLWEQD---PERLLEYNVRDVELCVELDRkqDVIAFWDEVRTFVGCKLEDA--TTPGDAVDMYVLHK 474 
WP_077205258 395 VGKERY--PGDIGDLWEDD---PERLLEYNLRDVELCVELNDqqEIIPFWQEVASFVGCKLEDA--TTPGDAVDMYVLHK 467 
WP_074176118 310 ETKVRY--SGTITALWQSD---PARLVEYNYRDVELCVGIDKknNIIEFYREIARYVGCPLDRT--LNSSNVIDIFVLRK 382 
WP_014587056 436 FQERGRViPPKPDadlssaraAQSSELKGGEVLEPKKGLVEDVLILDYRSLYPSIMMAHNLCYSTVVTDerPPSGGVVKP 515 
WP_011448182 400 AHGKFIL-PSKGY--------SPGDEFEGATVFEPSSGIRENVVVLDLKSLYPMAMMTINASPETK-DP----NGD-LIA 464 
WP_083767029 393 AFGRFIL-PSKGA--------VVAEEFEGATVFDPSRGVRENVVVLDLKSLYPMAMMTINASPETK-DP----DGE-LRA 457 
WP_013329857 381 AHGKYVL-PSKGF--------ANAEEFEGATVFDPSLGVKENVVVLDLKSLYPMCMMTINASPETK-DP----NGE-LHA 445 
WP_008415633 447 VHGEFAL-PSKGR--------VDSEEYEGGAVFDPITGVKENVTVLDLKSLYPMCMVTINASPETKAEPd--YEGETYRA 515 
WP_007314150 403 AFGRYVL-PSKGY--------APAEEFEGATVFDPSRGIRENVVVLDLKSLYPMAMMTINASPETK-DP----RGE-LRA 467 
WP_015286134 401 AFGNYVL-PSKGF--------ANAEEFEGATVFEPSKGVRENVVVLDLKSLYPMAMMTINASMETK-DP----AGE-LRA 465 
WP_020445284 475 VNGEFVL-PSKGQ--------QESEDYEGGAVFDPITGVREMVSVLDLKSLYPMCMVTTNASPETKVDPa-NYDGETFVA 544 
WP_077205258 468 LHGNFAL-PSKGQ--------HDAEDYEGGAVFDPITGVREMVTVLDLKSLYPMCMVTINASPETKVDPd-AYEGDTFRA 537 
WP_074176118 383 ASGRFIL-PSKGF--------AAGDEFEGATVFEPATGLRENVVVLDLKSLYPMAMMTINASPETK-NP----DGE-LRA 447 
WP_014587056 516 PSGGEFVLPGeaPGIVPGVLSDLLAQRTDIKRRMKSAS--EEERSILDAQQYALKILLNSFYGYSGYARARLYSLPLANA 593 
WP_011448182 465 PNGIKFRSKP--DGLTRSIISELLQERDLKKNKRNEYPfgSQEYQLYDMQQNVIKVIMNTYYGVSGYSRFRLYDREIGSA 542 
WP_083767029 458 PNGIHFRSAP--DGLTRSIISELLVERDEKKRLRNTFPfgSDEYLLYDLQQNALKVIMNSYYGVSGYVRFRLYDREIGAA 535 
WP_013329857 446 PNGIRFRKEP--DGLTRSIISDLLAERDEKKALRNKYEygSPEYKLYDIQQNVMKVIMNTYYGVSGYARFRLYDREIGSA 523 
WP_008415633 516 PNGMEFKRQP--DGIIRSMVDELLTERDRKKSRRAEHSpgSGEYERFDRQQGAVKVIMNSLYGVLGWERFRLYDKDVAGA 593 
WP_007314150 468 PNGVRFRKEP--DGLTRSIIRDLLAERDEKKAMRNRYPigSPEYTVYDMQQNVIKVIMNTYYGVSGYARFRLYDREIGAA 545 
WP_015286134 466 PNGIRFRKQP--NGLTRSIIADLLKERDEKKRLRNTFAfgSPEYIMYDMQQNVLKVIMNTYYGVSGYTRFRLFDREIGAA 543 
WP_020445284 545 PNGTHFQKEP--DGIIREMVDELLSERESKKAARNEHDpdSADYDRFDRQQAAVKVIMNSLYGVLGWERFRLYDKEMGAA 622 
WP_077205258 538 PNGQHFRKEP--DGVIREMVDELLSEREEKKSLRNDHDpdSSEYEQFDRQQAAVKVIMNSLYGVLGWDRFRLYDKEMGAA 615 
WP_074176118 448 PNGVRFSREP--DGLTRSILSELLVERDERKRLRNQYPfgSPEYVLYDLQQNVLKVIMNSYYGVSGYTRFRLYDREIGSA 525 
WP_014587056 594 VTSFGRTNILNTKRMVEEIGSvyvrdgkallpeemasasgdsfpavgefkrfdlSVVYGDTDSVFIRLKPFggsgvkpTL 673 
WP_011448182 543 VTSVGRAIIEHTRNTIENMGY---------------------------------SVIYGDTDSCMIQIP-At------SL 582 
WP_083767029 536 VTAVGRAIIEHTRQVIEGMGY---------------------------------RVLYGDTDSCMIQLP-Pg------DK 575 
WP_013329857 524 VTSVGRAIIEHTRNVIEKMGF---------------------------------TVLYGDTDSCMIQLP-Pl------DR 563 
WP_008415633 594 VTATGRDVIEFTEESANELGY---------------------------------QVTYGDTDSVMLELGAGv------DR 634 
WP_007314150 546 VTSVGRAIIEHTRRVIEGLGY---------------------------------RVIYGDTDSCMVELP-Gl------DL 585 
WP_015286134 544 VTSVGRAIIEHTRREIEKMGY---------------------------------TVIYGDTDSCMIQLP-Pl------DR 583 
WP_020445284 623 VTATGREVIEFTEEAANDIGH---------------------------------QVVYGDTDSVMLELGGDv------ST 663 
WP_077205258 616 VTATGRDVIDYTDEVAGRMDK---------------------------------EVVYGDTDSVMIELGGDv------SK 656 
WP_074176118 526 VTSVGRAIIKHTRDVITDLGY---------------------------------TVLYGDTDSCMVEVP-Pg------SL 565 
WP_014587056 674 EEAELVGGKIAETVTSRLPp----------------pMELVFEAFARRGLFL-VKKRYALw-VFEkvgGEwrdK----IK 731 
WP_011448182 583 EETITKAREIEAVLNESYNtfarevl-----haekhyFSIKFEKVYRRFFQGgKKKRYAGnlIWK---EG---KsvdeTD 651 
WP_083767029 576 ETTIRNARAIEQKLNESYGlfsrtvl-----naekhyFSIKFEKIYLRFFQAgKKKRYAGhlVWK---EG---KdvdeID 644 
WP_013329857 564 GETINTAREIEAELNSSYStfakevl-----gaekhyFSIKFEKIYKRFFQAgRKKRYAGhlVWK---EG---QdidkID 632 
WP_008415633 635 QSAIEQSFEIEKHINGSYDefasevl-----daedhrFQIEFEKLYRRFFQAgRKKRYAGhiIWK---EG---KdvddID 703 
WP_007314150 586 PATIAESRRIEAVLNASYGefakrel-----nadvhyFSIKFEKVYRRFFQAgRKKRYAGhlVWK---EG---SivdgID 654 
WP_015286134 584 EKTIEIARSIEKQLNASYPvfaktel-----nadvsfFSIKFEKIYARFFQAgKKKRYAGslVWK---EG---KdvqeTD 652 
WP_020445284 664 EEAIEQSFEIEEHINGAYDefaleel-----naeehrFQIEFEKLYRRFFQAgKKKRYAGhiVWK---EG---KevddVD 732 
WP_077205258 657 EAAIEQSFELEEQINDAYDefaeselnvdldageehrFQIEFEKLYRRFFQAgKKKRYAGhiVWK---EG---KdvddID 730 
WP_074176118 566 EETIAKARAIEARLNASYGefarrel-----aadkhyFSIKFEKVYRRFFQAgKKKRYAGhlVWK---EG---KdvdeVD 634 
WP_014587056 732 VRGMETVRRDWCELTSKTLNRSLELVLMEGRVEEAVDLAKSVIDRLQRLDLRkdpeiLEDLVLTRRYTKSTASYKNKQPH 811 
WP_011448182 652 MVGFEAKRSDSPLLTRKVMKEVMNKILQGADLPEIKKYLGDIIKTYRSGGYS-----LDEIGIPGGLGKELKDYGTDDAH 726 
WP_083767029 645 IVGFEIKRSDSPQITKIVQRRVMEMILSGEEYSAVKSYLGDVIRRYRGGKFP-----LEEIGIPGGIGKQLGQYETDDAQ 719 
WP_013329857 633 IVGFEMKRSDSSHMTKVVQLHVMELILKGSEISELKAYLKEIITGYRKGRYS-----LDDIGVPGGIGKALDAYETKDAQ 707 
WP_008415633 704 ITGFEYKRSDIAPITKEVQKDVIEMIVLGEDLEEVKSYVHDVVTDFQEGEID-----LDRIAVPGGIGKRLDNYDTDTAQ 778 
WP_007314150 655 IVGFEIRRSDYPQITKVVQARVIELILRGEGYDAVRKYLGEVIKNFRAGKFP-----LDEIGIPGGIGKELGEYQNDDAH 729 
WP_015286134 653 IVGFEIKRSDTPQITKHVQKTVMELILDGKGLDEVKAFLGEVIKKYRAGKYT-----LDEIGIPGGIGKSLDDYETDDAQ 727 
WP_020445284 733 ITGFEYQRSDIAPITKEVQLEVIDMIVRGEPIDTVTDYVHETIDRFKNGDVD-----PVEVGIPGGIGKRLDNYDTDTAQ 807 
WP_077205258 731 ITGFEYQRSDIAPITKEVQKEVIDRIVTGADTEDIKDYVHEVIQDFEAGNVS-----LDDVGIPGGIGKKLDNYDTDTAQ 805 
WP_074176118 635 VVGFEIRRSDSPQVTREVQHDVLEMILRGDAFRDVQAYLRDVITRYRRGEYS-----LDEAGIPGGIGKNLDSYENEDAH 709 
WP_014587056 812 VQLAEKMRARgGPVPSVGDRVPFVIVRGR------------Glf----------------vdRAEDpSYALe--nGLLID 861 
WP_011448182 727 VRGATYSNTYlGTNFGKGSKPKRIYIKSvnggy--------------------------pktdVLCfEYGDqvpdAFVPD 780 
WP_083767029 720 VRGAKYSNRYlGTEYGKGSKPKRVYIKQvkgky--------------------------pktdVLCfEYADqvpsEFVID 773 
WP_013329857 708 VRGAMYSNKYlGTDFKRGSKPKRVYVKNvtsky--------------------------pktdVICfEYADqvppEFIVD 761 
WP_008415633 779 VRGAKYANLLlGTNFTRGSKPKRLYLRKVhpkffrrmenerGldpqrdrly----aefkrdpdVICfEYEDqlpeEFEVD 854 
WP_007314150 730 VRGARYANDYlGMDFSRGSKPKRVYIRNvtgky--------------------------pktdVLCfEYGDqvppEFQVD 783 
WP_015286134 728 VRGAKYANQYlHTEFGKGSKPKRIYIKTvtaky--------------------------pktdVLCfEYADqvppEFVVD 781 
WP_020445284 808 VRGAKYANLMlGTNFDRGSKPKRLYLEDVhpeffrrlenqrGfnpqeddmylqfkrdveagdGVICiEYADqlpeEFEID 887 
WP_077205258 806 VRGAKYANLLlGTNFASGSKPKRVYLDRVhsdfwdkveaehGldpstdply----gefrrdpdVICyEYADqvpeEFEVD 881 
WP_074176118 710 IRGAKYSNKYlGTDFKRGSKPKRVYIKTvteky--------------------------prtdVVCfEYADqvppEFVVD 763 
WP_014587056 862 TDYYINKQILPPLLRLLAPFGVSKEQLVCCPEQQRLFDLA 901 
WP_011448182 781 LELMLEKTIKSPISRILEPIGWSWSDVDPTR--TTLSDFF 818 
WP_083767029 774 YETMLEKTIKQPITRIIEALGWNWEDVDPSR--TTLAQFG 811 
WP_013329857 762 YETMLEKSIKQPISRIIEAIGLKWDDIDPSR--TTLFDFG 799 
WP_008415633 855 WEKMLEKTLKGPISRVLEALDISWDEVKSGQQQTGLGSFM 894 
WP_007314150 784 WEVMMEKTIKQPISRIIEALGWSWSDIDPSR--TTLAQWG 821 
WP_015286134 782 LELMLEKTIRQPISRIIEALGWSWADVDPSR--TTLAQWG 819 
WP_020445284 888 WEKMLDKTLKGPIERILEALDVSWEEVESGQEQTGLSGFM 927 
WP_077205258 882 WEKMLDKTLKGPIERILEALDISWDEVKSGQEQTGLGNFM 921 
WP_074176118 764 WETMLEKTLKGPLSRIIEPLGWDWHDVDPTR--TTLFDFG 801 
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