Conserved Protein Domain Family
Tme5_EGF_like

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pfam09064: Tme5_EGF_like 
Thrombomodulin like fifth domain, EGF-like
Members of this family adopt a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C.
Statistics
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PSSM-Id: 312559
Aligned: 3 rows
Threshold Bit Score: 46.417
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q4SWS1   339 RHCEESRCEPQCDPNSQGqmQCFCPEGYILDQSNssgVC 377 spotted green pufferfish
CAF99002  39 LHCAQKKCPAVCDVETGG--SCYCPEGFIREDNF---CH 72 
P15306   405 MFCNETSCPADCDPNSPT--VCECPEGFILDEGS---VC 438 house mouse
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