2D9U,3H91,5EPK


Conserved Protein Domain Family
CD_Cbx2

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cd18647: CD_Cbx2 
Click on image for an interactive view with Cn3D
chromodomain of chromobox homolog 2
CHRomatin Organization Modifier (chromo) domain of chromobox homolog 2 (CBX2), a component of the PcG repressive complex PRC1, one of the two classes of PRCs. PcG proteins form large multiprotein complexes (PcG bodies) which are involved in the stable repression of genes involved in development, signaling or cancer via chromatin-based epigenetic modifications. Mammalian PRC1 includes canonical (cPRC1) and non-canonical complexes; cPRC1, contains four core subunits including one CBX protein (CBX2, CBX4, and CBX6-CBX8) that binds H3K27me3. CBX family members have different affinity for H3K27me3, with CBX7 having the highest binding capability. The human CBX proteins show distinct nuclear localizations and contribute differently to transcriptional repression. Some CBX proteins of the PRC1 complex have been implicated in transcriptional activation as well as in PRC1-independent roles in embryonic stem cells and in somatic cells.
Statistics
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PSSM-Id: 349294
Aligned: 7 rows
Threshold Bit Score: 97.434
Created: 5-Dec-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #####                 ## #   #  ##  ## ## ##       
2D9U_A         8 EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK 60  human
3H91_A         1 EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK 53  human
5EPK_A         2 EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK 54  human
AAH85553       9 EQVFDAECILNKRTRKGKLEYLVKWRGWSSKHNSWEPQENLLDPRLLVAFNKR 61  zebrafish
BAK20222       9 EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK 61  Amami-oshima island spiny rat
NP_001081900   9 EQVFAAECILSKRLRKGTAEYLVKWRGWSSKHNSWEPEENILDPRLLVAFQKR 61  African clawed frog
Q14781         9 EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK 61  human

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