5EQ0,1PFB,2D9U,2K1B,2K28,3GV6,1PDQ,2L1B,3H91,2DNV


Conserved Protein Domain Family
CD_polycomb_like

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cd18627: CD_polycomb_like 
Click on image for an interactive view with Cn3D
chromodomain of polycomb and chromobox family proteins
CHRomatin Organization Modifier (chromo) domain of Polycomb and Polycomb-group (PcG) chromobox (CBX) family proteins such as CBX2, CBX4, CBX6, CBX7, and CBX8. These CBX proteins are components of the PcG repressive complex PRC1, one of the two classes of PRCs. PcG proteins form large multiprotein complexes (PcG bodies) which are involved in the stable repression of genes involved in development, signaling or cancer via chromatin-based epigenetic modifications. Mammalian PRC1 includes canonical (cPRC1) and non-canonical complexes; cPRC1, contains four core subunits including one CBX protein (CBX2, CBX4, and CBX6-CBX8) that binds H3K27me3. CBX family members have different affinity for H3K27me3, with CBX7 having the highest binding capability. The human CBX proteins show distinct nuclear localizations and contribute differently to transcriptional repression. Some CBX proteins of the PRC1 complex have been implicated in transcriptional activation as well as in PRC1-independent roles in embryonic stem cells and in somatic cells.
Statistics
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PSSM-Id: 349277
Aligned: 18 rows
Threshold Bit Score: 73.9648
Created: 30-Nov-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:5EQ0; human CBX8 chromodomain binds UNC3866, which closely mimics a methylated H3 tail, contacts at 4A
  • Structure:3GV6; human CBX6 chromodomain binds H3K9 peptide, contacts at 4A
  • Structure:1PDQ; Drosophila melanogaster Polycomb chromodomain binds histone H3 Tail containing trimethyllysine 27, contacts 4A
  • Structure: 2L1B; human CBX7 chromodomain binds H3K27me3 peptide, contacts at 4A
  • Structure:3H91; human CBX2 chromodomain binds H3K27 peptide, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     ####               # ## #   # #### ## ## ####    
5EQ0_A      5 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEE 53  human
1PFB_A      4 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQ 52  fruit fly
2D9U_A     11 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK 59  human
2K1B_A     22 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE 70  human
1PDQ_A     21 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQ 69  fruit fly
2L1B_A      5 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE 53  human
3H91_A      4 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK 52  human
EDO40283   11 YAAETILKERVRDGKVWYFIKWKGYSQRYNTWEPEENVLDPRLLKAYQE 59  starlet sea anemone
CDW57139   10 YAAECIKKRRVRKGKVEYLIHWSGYSSKDDSWEPEENILDQRLLDEFHS 58  human whipworm
AEF33431   12 FRADYIKKKRIRKGKVQYLVKWKGYSTKQCTWEPEENILDPFLLFDFNS 60  Suminoe oyster

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