2DIT,6N3D


Conserved Protein Domain Family
RRM2_TatSF1_like

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cd12282: RRM2_TatSF1_like 
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RNA recognition motif 2 (RRM2) found in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
This subfamily corresponds to the RRM2 of Tat-SF1 and CUS2. Tat-SF1 is the cofactor for stimulation of transcriptional elongation by human immunodeficiency virus-type 1 (HIV-1) Tat. It is a substrate of an associated cellular kinase. Tat-SF1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a highly acidic carboxyl-terminal half. The family also includes CUS2, a yeast homolog of human Tat-SF1. CUS2 interacts with U2 RNA in splicing extracts and functions as a splicing factor that aids assembly of the splicing-competent U2 snRNP in vivo. CUS2 also associates with PRP11 that is a subunit of the conserved splicing factor SF3a. Like Tat-SF1, CUS2 contains two RRMs as well.
Statistics
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PSSM-Id: 409724
Aligned: 23 rows
Threshold Bit Score: 115.414
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DIT_A        15 ERVVIIKNMFHPMDFe---dDPLVLNEIREDLRVECSk-FGQIRKLLLFDRHPdGVASVSFRDpEEADYCIQTLDGRWFg 90  human
XP_002112423 262 DKVLIVKNIFHPDEFe---kDPTYITELKSSVKEECEakFGPIKKIIIFDRHPeGVISITFANpEDRDKCLEVMHGRYFa 338 Trichoplax adha...
EFX90394     339 ENVVVLKRLFKPEEFd---vNPAMLLEYQRDLREECAk-FGHVKRVVIFDRNEeGAAQVFFKTpEEADRCVEVLHGRWFa 414 common water flea
NP_649313    414 EKTVIIKNLFTPELFe---kEVELILEYQNNLREECSk-CGMVRKVVIYDRHPdGVAQINMASpEEADLVIQMMQGRYFg 489 fruit fly
NP_490765    310 DCTVIVKNLFTQEMMn---kNAALMLDLKEEMTQSCQk-YGIVKKVVVYANHPdGVVSVTFPTtEESDMAVKYLHGRVVd 385 nematode
CCD59930     380 ERVVILKNAFIESDFq---rDVTLIPIVRERLRVQCAk-CGIIKKIVVHDAHPeGVVSVTFSTpEEADTGIKFLSKALFv 455 Schistosoma man...
CBY32549     211 EKVVVFSNCFTVDEVa---rDPTIILQVKDALRAACSg-FGAPRKVNMFDGHPnGICSVAFNSaEDADRAIDGLDKRLLr 286 Oikopleura dioica
ACO13029     347 HKVIVLFNLFSPSDFv---eKPEKIIDLKVKIRNSCEk-FGRVKRLEVYDQHVdGIGMISFNDpIEADLAIQMLNGRLFn 422 salmon louse
CAK86116     282 LKILIFKNLYSPTQAq----NPEFMNQLYGELLLKIEslQIYVQKLEFFKDHPqGVAKVKFHSaYDAEICLSNLSGIEFn 357 Paramecium tetr...
XP_002808796 336 KKIVVFRNVFSYEDAmkydeGDSFYEFIKNMLEMEIKk-YVPVHKVYPIPKHPhGIVCVKFKGvEEAETVVSCFNDIELn 414 Plasmodium falc...
2DIT_A        91 -------GRQITAQAWDGTTDY 105 human
XP_002112423 339 -------KRKLHAEKWDGFTNY 353 Trichoplax adhaerens
EFX90394     415 -------GQKITAETWDGQTKY 429 common water flea
NP_649313    490 -------QRQLSAEAWDGKTKY 504 fruit fly
NP_490765    386 -------GRKLTAELWDGRTKF 400 nematode
CCD59930     456 dypgsggPRQLEAERWDGKTNY 477 Schistosoma mansoni
CBY32549     287 -------GRTLSAKRWDGVTDY 301 Oikopleura dioica
ACO13029     423 -------GRVLKVIVWDGKTKY 437 salmon louse
CAK86116     358 -------QRNINIQYWDGRQNF 372 Paramecium tetraurelia strain d4-2
XP_002808796 415 -------GKKLEVYFYDGKQDF 429 Plasmodium falciparum 3D7
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