4OPB,5T7K,5T7J,5LSV,5T7N


Conserved Protein Domain Family
AA13_LPMO-like

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cd21137: AA13_LPMO-like 
AA13 lytic polysaccharide monooxygenase, and similar proteins
This family contains starch-degrading (also called starch-active) lytic polysaccharide monooxygenase (LPMO), a representative of the new CAZy AA13 family and classified as an auxiliary activity enzyme. This enzyme acts on alpha-linked glycosidic bonds and displays a binding surface that is quite different from those of LPMOs acting on beta-linked glycosidic bonds, indicating that the AA13 family proteins interact with their substrate in a distinct fashion. The active site contains an amino-terminal histidine-ligated mononuclear copper. This enzyme generates aldonic acid-terminated malto-oligosaccharides from retrograded starch and significantly boosts the conversion of this recalcitrant substrate to maltose by beta-amylase.
Statistics
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PSSM-Id: 412056
Aligned: 10 rows
Threshold Bit Score: 472.063
Created: 27-Jan-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Cu binding site
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:Cu binding site [ion binding site]
Evidence:
  • Comment:LPMOs are copper-dependent enzymes that oxidatively cleave polysaccharides
  • Comment:copper coordination is provided by the terminal NH2 and the pi-N of the side chain of the N-terminal histidine, the tau-N of a further histidine side chain and a tyrosine; latter 2 residues are invariant across the AA13 family
  • Structure:4OPB: Aspergillus oryzae starch-degrading lytic polysaccharide monooxygenase binds copper; contacts at 4.0A
  • Structure:5T7J: Aspergillus oryzae AA13 lytic polysaccharide monooxygenase binds zinc; contacts at 4.0A
  • Comment:zinc is used in structural studies as it produces more reproducible crystals than copper

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #                                                                               
4OPB_A         1 XGYMYIPsSRTRLGHEAgidsCPECAILEPVssWPDLDAAPVGRsgPCGYNARdSIDYNQPTtnWGSDAVQSYSPGEEIE 80  Aspergillus ory...
5T7K_A         1 XGYMYIPsSRTRLGHEAgidsCPECAILEPVssWPDLDAAPVGRsgPCGYNARdSIDYNQPTtnWGSDAVQSYSPGEEIE 80  Aspergillus ory...
5T7J_A         1 XGYMYIPsSRTRLGHEAgidsCPECAILEPVssWPDLDAAPVGRsgPCGYNARdSIDYNQPTtnWGSDAVQSYSPGEEIE 80  Aspergillus ory...
5LSV_A         1 XGYMYIPsSRTRLGHEAgidsCPECAILEPVssWPDLDAAPVGRsgPCGYNARdSIDYNQPTtnWGSDAVQSYSPGEEIE 80  Aspergillus ory...
5T7N_A         1 XGYMYIPsSRTRLGHEAgidsCPECAILEPVssWPDLDAAPVGRsgPCGYNARdSIDYNQPTtnWGSDAVQSYSPGEEIE 80  Aspergillus ory...
XP_963607     19 HGYLTIPfSRTRLGAEAgldtCPECSILEPVtaWPNVTEAKVGRsgPCGYNARvSIDYNQPAtnWGNSPVVTYTAGDTVD 98  Neurospora cras...
XP_018753816  19 HGYLSKPmSRTGLNAEAgpdtCPECTILEPVtaWPDLDAAKVGRsgPCGYNARvSVDYNQPGanWGKEPIATYKPGQVVD 98  Fusarium vertic...
KXH36482      19 HGYLTIPsSRTRLGHEAgidsCPECTIREPVsaWPDLTAATVGRsgPCGYNARvSVDYNQPGsnWGSNVVATYTRGQTVD 98  Colletotrichum ...
KFY32663      19 HGYLVVPnSRTGLGHEAsldtCPECTILEPVasWPDLDAAPVGRsgPCGYNARvSIDYNQPSdnWGNSPVATYAPGDIVD 98  Pseudogymnoascu...
OTB11029      19 HGYLTVPtSRTRQGAESgkdtCPECTILEPVtaWPDVDEAKVGRsgPCGYNARvSFDYNQPSadWGNKVVATYSPGQVVD 98  Daldinia sp. EC12
Feature 1                  #                                                                     
4OPB_A        81 VQWCVDHNGDHGGMFTYRICQDqSIVDKFLdpsYLPTNdEKQAAEDCFDAgLLPCTDVsGQECGYSADCTEGeaCWRNDW 160 Aspergillus ory...
5T7K_A        81 VQWCVDHNGDHGGMFTYRICQDqSIVDKFLdpsYLPTNdEKQAAEDCFDAgLLPCTDVsGQECGYSADCTEGeaCWRNDW 160 Aspergillus ory...
5T7J_A        81 VQWCVDHNGDHGGMFTYRICQDqSIVDKFLdpsYLPTNdEKQAAEDCFDAgLLPCTDVsGQECGYSADCTEGeaCWRNDW 160 Aspergillus ory...
5LSV_A        81 VQWCVDHNGDHGGMFTYRICQDqSIVDKFLdpsYLPTNdEKQAAEDCFDAgLLPCTDVsGQECGYSADCTEGeaCWRNDW 160 Aspergillus ory...
5T7N_A        81 VQWCVDHNGDHGGMFTYRICQDqSIVDKFLdpsYLPTNdEKQAAEDCFDAgLLPCTDVsGQECGYSADCTEGeaCWRNDW 160 Aspergillus ory...
XP_963607     99 VQWCVDHNGDHGGMFSYRICQDqELVNKFLtpgYLPTEaEKQAAEDCFEKgTLPCTDVnGQSCDFSPDCQQGqaCWRNDW 178 Neurospora cras...
XP_018753816  99 VQWCVDNNGDHGGMYAYRICQDqDIVDKFLdpdYIPTEaEKQAAEDCFEEgLLPCTDVdGQECGYSPDCSADqpCHRNDW 178 Fusarium vertic...
KXH36482      99 VQWCVDNNGDHGGMFSYRICQDqSIVDKFItpgYLPTDdEKQAAENCFQAgTLKCTDVsGQSCDYSPDCTSGqaCWRNDW 178 Colletotrichum ...
KFY32663      99 VQWCVDANGDHGGMFSYRICQDqTIVDKFLdasYLPTDgEKEAAEACFQAgALDCTDVsGQDCGYNPDCASGeaCYRNDW 178 Pseudogymnoascu...
OTB11029      99 VEWCVDHNGDHGGMFAYRICQDqAIVDKFLdpdYLPTEeERQAAEDCFEKgLLPCTDVdGQDCGYNPDCTEGqaCYRNDW 178 Daldinia sp. EC12
Feature 1                                                                      # #         
4OPB_A       161 FTCNGFea-sDRPKCQGVDNAELNSCYTSiaGGYTVTKKVKLPEYtSNHTLISFKWNSFQTGQIYLSCADIAIQ 233 Aspergillus oryzae RIB40
5T7K_A       161 FTCNGFea-sDRPKCQGVDNAELNSCYTSiaGGYTVTKKVKLPEYtSNHTLISFKWNSFQTGQIYLSCADIAIQ 233 Aspergillus oryzae RIB40
5T7J_A       161 FTCNGFea-sDRPKCQGVDNAELNSCYTSiaGGYTVTKKVKLPEYtSNHTLISFKWNSFQTGQIYLSCADIAIQ 233 Aspergillus oryzae RIB40
5LSV_A       161 FTCNGFea-sDRPKCQGVDNAELNSCYTSiaGGYTVTKKVKLPEYtSNHTLISFKWNSFQTGQIYLSCADIAIQ 233 Aspergillus oryzae RIB40
5T7N_A       161 FTCNGFea-sDRPKCQGVDNAELNSCYTSiaGGYTVTKKVKLPEYtSNHTLISFKWNSFQTGQIYLSCADIAIQ 233 Aspergillus oryzae RIB40
XP_963607    179 FTCNAFqa-dSRRGCQGVDNAALGSCFTTiaGGYTVTKKIKIPNYiSGHTLLSFRWNSFQTAQVYLSCADIAIV 251 Neurospora crassa OR74A
XP_018753816 179 FTCKSFdgnsDGKGCRGVDNAPINSCYTSiaGGYTVSGKIKIPDYvSNHTLLSFKWNSFQTPQVYLTCADIAIS 252 Fusarium verticillioi...
KXH36482     179 FTCNAFqa-sSRRGCQGVDNNALGSCYTSiaGGYTVTKKIKIPDYvSNHTLLSLRWNSFQTGQVYLTCADIAIG 251 Colletotrichum simmon...
KFY32663     179 FTCNGFsa-gDQTKCKGVDNAELNSCYTSiaGGYTVSKKIKIPDYaSDHTLLSLRWNSFQTGQIYLTCSDIAIS 251 Pseudogymnoascus sp. ...
OTB11029     179 FTCNGFeh-gDQTKCQGVDKAELNSCFTTiaGGYTVTKKIKIPDYvSNHTLLSFKWNSFQTPQVYLSCADIAIS 251 Daldinia sp. EC12

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