2E6Z


Conserved Protein Domain Family
KOW_Spt5_2

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cd06082: KOW_Spt5_2 
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KOW domain of Spt5, repeat 2
Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at its C-terminus. Spt5 is involved in transcription elongation and termination. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. KOW_Spt5 domains play critical roles in recruitment of multiple other eukaryotic transcription elongation and RNA biogenesis factors and additionally are involved in the binding of the eukaryotic Spt5 proteins to RNA polymerases.
Statistics
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PSSM-Id: 240506
Aligned: 55 rows
Threshold Bit Score: 54.4303
Created: 6-Mar-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2E6Z_A          8 FQPGDNVEVCEGELINLQGKILSVDGN--KITIMPKhe----dlKDMLEFPaqELRK 58   human
Q6BZG0        496 FQPGDKVEIRRGEQAKTIGKVLSTSLN--EITILVTdsgdpkfvNQRLTVPanDLRK 550  Debaryomyces hansenii CBS767
P27692        534 FQPGDRIEVLNGEQRGSKGIVTRTTKD--IATIKLNg------fTTPLEFPisTLRK 582  Saccharomyces cerevisiae S288c
Q6FRZ5        486 FQPGDRVEILNGEQRGSRGIVAKSTTTi-ATVNLPEf------pLKPLEFPvsALRK 535  Candida glabrata CBS 138
CCH40836      444 FRTGDRVQVLQGEQKGLKGDVISTSND--VVLIKPIsf-----sGGNLEFPtnNLRK 493  Wickerhamomyces ciferrii
EIE89618      376 FQPGDTVSVVEGDMIHSTGIVENVLDS--SVVVSLKvd----gsKKRVTLPakQLRK 426  Rhizopus oryzae RA 99-880
EIF48961      279 FQPGDRIVVSSGEQTGMHGHVTSVAGNgkIVQVILKdg----paKEEVEVPasALRK 331  Dekkera bruxellensis AWRI1499
EKG21276      389 YLPGDMVEIYQGEQTGVSGRAVAVHND--IVTLRVQegd---lkGQTVEAPvkSLRK 440  Macrophomina phaseolina MS6
XP_001937788  454 FAAGENVEIYTGEQKGIRGTTVTVTGD--ILTLRVSegd---lkGRRIDAPvkTLRK 505  Pyrenophora tritici-repentis Pt-1C-BFP
XP_002493383  478 FQPGDNVEIINGELNHLTGTVSSVNQS--TIVSVRLhsdddtinSETVEIPtsDLRK 532  Pichia pastoris GS115
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