4AOJ,4F0I


Conserved Protein Domain Family
PTKc_TrkA

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cd05092: PTKc_TrkA 
Click on image for an interactive view with Cn3D
Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A
PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a receptor PTK (RTK) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. The TrkA subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270674
Aligned: 5 rows
Threshold Bit Score: 623.912
Created: 29-Jun-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    ## ##   #                 # #                                       
4AOJ_A        37 HIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR 116 human
4F0I_A         8 HIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR 87  human
CAG00933     389 HIKRQDIVLKWELGEGAFGKVYLAECANLSPDSDRMLVAIKTLKDANESTRQDFQREAELLTVLQHQHIVRFYGVCTDGE 468 Tetraodon nigro...
Q91009       487 HVQRRDIVLKWELGEGAFGKVFLAECSHLLPEQEKTLVAVKALKEVTENARLDFQREAELLTVLQHEHIVKFYGVCTEGD 566 chicken
XP_002939035 516 HIKRRDIVLKWELGEGAFGKVFLAEFYNLTPENEKTLVAVKALKEATENARQDFQREAELLTVLQHEHIVKFYGVCTDGE 595 western clawed ...
Feature 1             ####  ##                                                         ## #      
4AOJ_A       117 PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLV 196 human
4F0I_A        88 PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLV 167 human
CAG00933     469 LLAMVFEYMRHGDLNRFLRAHGPDAHILEESKMAALGQLTLPQMLHIAAQIASGMVYLASLHFVHRDLATRNCLVGEHLV 548 Tetraodon nigro...
Q91009       567 PLIMVFEYMKHGDLNRFLRSHGPDAKILDQGQGQPCGQLTLSHMLQIATQIASGMVYLASLHFVHRDLATRNCLVGHDLV 646 chicken
XP_002939035 596 PLIMVFEYMKHGDLNRFLRSHGPDAKILDNGNGQPYGQLNLTQMLQIASQIASGMVYLASLHFVHRDLATRNCLVGNNLV 675 western clawed ...
Feature 1            #                                                                           
4AOJ_A       197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQG 276 human
4F0I_A       168 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQG 247 human
CAG00933     549 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESIMYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQG 628 Tetraodon nigro...
Q91009       647 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQG 726 chicken
XP_002939035 676 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQG 755 western clawed ...
Feature 1                                                
4AOJ_A       277 RELERPRACPPEVYAIMRGCWQREPQQRHSIkDVHARLQA 316 human
4F0I_A       248 RELERPRACPPEVYAIMRGCWQREPQQRHSIkDVHARLQA 287 human
CAG00933     629 RELERPRTCPNEVYVLMQGCWQREPQQRMVIkDIHSCLLR 668 Tetraodon nigroviridis
Q91009       727 RELERPRTCPSEVYDIMQSCWQREPQQRSIQ-DIHSRLQA 765 chicken
XP_002939035 756 RQLERPRTCPTEVYNIMQGCWQREPQQRLNIkEIHNKLQA 795 western clawed frog

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