1QDV,1EXB,3LUT,1T1D


Conserved Protein Domain Family
BTB_POZ_Kv1_KCNA

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cd18377: BTB_POZ_Kv1_KCNA 
Click on image for an interactive view with Cn3D
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in KCNA/Kv1 subfamily of Shaker-type voltage-dependent potassium channels
Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. The potassium voltage-gated channel subfamily Kv1, also known as subfamily A, contains eight alpha subunit members, Kv1.1 (KCNA1), Kv1.2 (KCNA2), Kv1.3 (KCNA3), Kv1.4 (KCNA4), Kv1.5 (KCNA5), Kv1.6 (KCNA6), Kv1.7 (KCNA7), and Kv1.8 (KCNA10), which are orthologs of the Shaker gene in Drosophila. They are delayed rectifiers except for Kv1.4 (KCNA4), which is an A-type potassium channel. Delayed rectifiers are slow opening and closing voltage-gated potassium channels. Because of their delayed activation kinetics, they play an important role in controlling action potential duration. A-type channels are fast/rapidly inactivating potassium channels. Kv1/KCNA subfamily alpha subunits form functional homo- or hetero-tetrameric channels (with other Kv1/KCNA alpha subunits) through their BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif.
Statistics
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PSSM-Id: 349686
Aligned: 25 rows
Threshold Bit Score: 160.531
Created: 12-Sep-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
tetramerbeta subunit
Conserved site includes 27 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Comment:based on the tetramer structure of Rattus norvegicus voltage-gated potassium channel Kv1.2 BTB domain
  • Structure:1QDV: Rattus norvegicus voltage-gated potassium channel Kv1.2 forms a tetramer, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #   # ########  #                   #  #   # ## ##  #   #  #    # #   #   ##  #
1QDV_A         1 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMryFDPLRNEYFFDRNRPSFDAILYYYQSGg-RLRRPvNVPLDIFSE 79  Norway rat
Q96RP8        13 ERLVLNVAGLRFETRARTLGRFPDTLLGDPARRGrfYDDARREYFFDRHRPSFDAVLYYYQSGg-RLRRPaHVPLDVFLE 91  human
XP_007908041  20 ERVVINVSGLRFETQLKTLGQFPDSLLGDPHRRIryFDPLRNEYFFDRNRPSFDAILYYYQSGg-RLKRPsTIPLDVFME 98  elephant shark
ETE70953      28 ERVVINVSGLRFETQVKTLRQFPNTLLGDPLRRLqyYDPLRNEYFFDRNRPSFDSILYYYQSGg-RLRRPiNVPLDVFLE 106 king cobra
XP_002117304   1 ERVAINVSGLRFETYESTLIKHPNTLLGNRARRDryYDYERKEYFFDRHRQSFEAILYYYQSEg-RLNRPsTVPWDIFYE 79  Trichoplax adha...
BAK02943      11 EKILINVSGMHFETWSWTLARFPKTLLGDPNKRKkyFDYIHNEYFFERHRQSFESILYYYQSNgrFLIRPmSVSSEVFFD 90  domesticated ba...
CCD75136     445 RRITINVSGLKFETWLTVLERHPTTLLGDYNKRKpfYDEYRKEYFFDRHRPSFEAIFNYYQYGg-RLKRPaTVSDDIFLT 523 Schistosoma man...
32564068      90 QIVTINVSGMRFQTFESTLSRYPNSLLGDRNKRQhfFVSDTNEFFFDRHRTTFESILYIYQSGg-RVKRPeIVPIDIFLK 168 Caenorhabditis ...
PIK47837     120 ERIVINVSGLRYETHLKTLCQFPNTLLGNPQRRIrfFDPIRNEYFFDRNRPSFDAILYYYQSGg-RLRRPvSVPIDIFTE 198 Japanese sea cu...
BAA78383      66 ERVIINVSGLRFETQMKTLSQFPDTLLGNRDKRMefYDPLRNEYFFDRNRPSFDAILYYYQSGg-RLRRPvNVPIDVFTE 144 Halocynthia ror...
Feature 1              
1QDV_A        80 EIRFYE 85  Norway rat
Q96RP8        92 EVAFYG 97  human
XP_007908041  99 ELRFYE 104 elephant shark
ETE70953     107 ELKFYQ 112 king cobra
XP_002117304  80 ELCFFQ 85  Trichoplax adhaerens
BAK02943      91 EIVFFE 96  domesticated barley
CCD75136     524 ELEFFQ 529 Schistosoma mansoni
32564068     169 EMRFFQ 174 Caenorhabditis elegans
PIK47837     199 EIKFFE 204 Japanese sea cucumber
BAA78383     145 EIKFYQ 150 Halocynthia roretzi

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