3YGS,1Z6T


Conserved Protein Domain Family
CARD_APAF1

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cd08323: CARD_APAF1 
Click on image for an interactive view with Cn3D
Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1
Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Statistics
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PSSM-Id: 260034
Aligned: 6 rows
Threshold Bit Score: 156.512
Created: 16-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
APAF1-Caspase9
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:APAF1-Caspase9 interaction site [polypeptide binding site]
Evidence:
  • Structure:3YGS: Homo sapiens APAF-1 CARD interacts with the caspase-9 CARD, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         ##  ## ##     #  #                                              
3YGS_C          7 NCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEpTQQQRAAMLIKMILkKDNDSYVSFYNALLHEgYKDLAAL 86   human
1Z6T_A          7 NCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEpTQQQRAAMLIKMILkKDNDSYVSFYNALLHEgYKDLAAL 86   human
Q9I9H8          7 SRLLRSKATLEQDIKASYLMDHMISDGVLTNDEEAKVLSKaTRKEQAVALLETLLrKDNRAYISFYNALIREsYGDLASL 86   zebrafish
NP_001085834    7 SLLLQNRTALVRDIRTAYIMDHMISDQVITPEEEARVKAQhTQVDKANFLINLILgKGKQAYVSFYNALLHEgYKDLALL 86   African clawe...
EMP26903        7 NHLLLNHEALERDIKTSYIMDHMVADEVLTLQEEEKVKAQtTQKERAAMLIKIILaKDNYSYISFYNALLHEgYKDLAAL 86   green seaturtle
AFN55258        7 ACLVRHRAALQRDLRTVYLLDHLVSDEVLNLAEEENVRAQpSQQARTAALIDILLrKDDSAFISLYKALLHEgYRDLAEL 86   Cynops orient...
Feature 1               
3YGS_C         87 LHDGIP 92   human
1Z6T_A         87 LHDGIP 92   human
Q9I9H8         87 LHSDLP 92   zebrafish
NP_001085834   87 LKEAAN 92   African clawed frog
EMP26903       87 LQDGIP 92   green seaturtle
AFN55258       87 LQPGLP 92   Cynops orientalis

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