3GXU,2WO1


Conserved Protein Domain Family
EphR_LBD_A4

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cd10482: EphR_LBD_A4 
Click on image for an interactive view with Cn3D
Ligand Binding Domain of Ephrin type-A Receptor 4
Ephrin receptors (EphRs) comprise the largest subfamily of receptor tyrosine kinases (RTKs). Class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. A loss of EphA4, as well as EphB2, precedes memory decline in a murine model of Alzheimers disease. EphA4 has been shown to have a negative effect on axon regeneration and functional restoration in corticospinal lesions and is downregulated in some cervical cancers. EphRs contain a ligand binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyrosine kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling).
Statistics
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PSSM-Id: 198450
Aligned: 5 rows
Threshold Bit Score: 355.89
Created: 9-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ephrin binding
Conserved site includes 29 residues -Click on image for an interactive view with Cn3D
Feature 1:ephrin binding site [polypeptide binding site]
Evidence:
  • Structure:3GXU, human EphA4-ephrinB2 complex, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  # #        #   ###### # #   #  # #                              ###   
3GXU_A         2 EVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCN 81   human
Q91694        30 EVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMESSQNNWLRTDWIPRSGAQRVYVEIKFTLRDCN 109  African clawed...
NP_990112     30 EVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWIPREGAQRVYIEIKFTLRDCN 109  chicken
NP_001005919  30 EVTLLDSRTVQGELKWVASPTEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWIPRGGAQRVYIEIKFTLRDCN 109  zebrafish
2WO1_A         4 EVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCN 83   human
Feature 1         ##                                         #  ##    ## #                       
3GXU_A        82 SLPGVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVG 161  human
Q91694       110 SLPGVMGTCKETFNLYYYESNNDKERFIRETQYVKIDTIAADESFTQVDIGDRIMKLNTEVRDVGPLSKKGFYLAFQDVG 189  African clawed...
NP_990112    110 SLPGVMGTCKETFNLYYYESNNDKERFIRESQFAKIDTIAADESFTQVDIGDRIMKLNTEVRDVGPLSKKGFYLAFQDVG 189  chicken
NP_001005919 110 SLPGVMGTCKETFNLYYYESNNDKERYIRENQFTKIDTIAADESFTQVDIGDRIMKLNTEVRDVGILTRKGFYLAFQDVG 189  zebrafish
2WO1_A        84 SLPGVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVG 163  human
Feature 1         ### #        
3GXU_A       162 ACIALVSVRVFYKK 175  human
Q91694       190 ACIALVSVRVFYKK 203  African clawed frog
NP_990112    190 ACIALVSVRVFYKK 203  chicken
NP_001005919 190 ACIALVSVRIFYKK 203  zebrafish
2WO1_A       164 ACIALVSVRVFYKR 177  human

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