Conserved Protein Domain Family
HTH_psq

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pfam05225: HTH_psq 
helix-turn-helix, Psq domain
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.
Statistics
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Structure
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PubMed ReferencesClick to see Conserved Features Help

pfam05225 is the only member of the superfamily cl04999
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O34478        296 KPEAFAAAVEYYVnaislNGAsVSQAKLAKKYGVSASTIS-SRYKEIESTLQ 346  Bacillus subtilis subsp. subtilis str. 168
EFN84240      423 SPADLDRALEAIR-----SGQ-TSVQRASTEFGIPTGTLYgRCKREGIELSR 468 
Q9VZU3        348 INDALDLAADAVIi----EG--LSLQKAADRFDISKTVLW-RRVRTNPAYMR 392  fruit fly
Q9VZU3        457 LRDKLAKAVHACL-----NEG-MSQNHAANLFEIPKSTLW-RHLQRRTTSQN 501  fruit fly
Q9VD60        771 DRDSLVEAVKAVQ-----RGE-MSVHRAGSYYGVPHSTLEyKVKER--HLMR 814  fruit fly
Q8N3X6        526 DHEIMEEAIAMVM-----SGK-MSVSKAQGIYGVPHSTLEyKVKERSGTLKT 571  human
Q9W0K7        569 RPETMAEAIFSVLk----EG--LSLSQAARKYDIPYPTFVlYANRVHNMLGP 614  fruit fly
XP_003344691   14 TPTQFSAAIAAVS-----SGS-LSIRKAAQAHSIPFSTLQ-RHFQGTPQAKR 58  
Q95YM8        592 TEEELQAALRDIQ-----SGK-LGTRRAAVIYGIPRSTLRnKVYKLAMERER 637  honey bee
CCD52918        6 TEDDIAAALFAIA-----GG--MSMRKACSEYGIPRTTLH-NRINGHLSHKk 49  
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