1VHX,1NMN,1NU0


Conserved Protein Domain Family
YqgF

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cd16964: YqgF 
Click on image for an interactive view with Cn3D
putative pre-16S rRNA nuclease YqgF and RuvX family
Escherichia coli YqgF has been shown to act as a pre-16S rRNA nuclease, presumably as a monomer. It is involved in the processing of pre-16S rRNA during ribosome maturation. The RuvX gene product from Mycobacterium tuberculosis was shown to act, in a dimeric form, as a Holliday junction resolvase (HJR). HJRs endonucleases specifically resolve Holliday junction DNA intermediates during homologous recombination. Holliday junctions are formed by the reciprocal exchange of strands between two DNA duplexes. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi; they may form homodimers and display structural similarity to RNase H and Hsp70.
Statistics
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PSSM-Id: 438564
Aligned: 582 rows
Threshold Bit Score: 80.6023
Created: 14-Dec-2016
Updated: 13-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putativehomodimer
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:putative nucleic acid substrate binding site [nucleic acid binding site]
Evidence:
  • Comment:based on the structure of the related HJR, Thermus thermophilus RuvC, in complex with a Holliday Junction substrate

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ## #                     #                                    ###       ##
1VHX_A         5 ILGLDLGT-KTLGVALSDex-gWTAQGIETIKinea-------egdyGLSRLSELIkdytIDKIVLGFPKNxngtvgpRG 75  Bacillus subtilis
WP_010880972   3 VLAVDYGT-KRVGLAIGDee-lKIVSPKGTVSsk------------eAVKKIKEIVeksrVGKVIVGLPLTpsgkegqRA 68  Aquifex aeolicus
WP_015418847   2 MLGIDYGT-KRIGLALGDkh-lKIYKPFKIIKnd-----------knLIQTLKHIVkaykIELIVLGYPLTpsgkegqRA 68  unclassified Hy...
AIT41431       9 IQQHNFGQnRNINLICLDi---GKTVGIAQKPtrgrlasdlnlslnkAMSHVTSGVragaCTLLVVGHPVTltgkrsaRT 85  Candidatus Hodg...
KKP38360       6 VLGLDYGQ-KRIGLAIGDle-qKIAVPKGFLIikk---------hkeALQKIKKLClenqIVLIVLGLPYLldrqetkTT 74  Peregrinibacter...
KKT34954       5 ILGVDYGA-KKIGLAIARqn-iAVGVVFGTIPnd-----------skLWHTLSKIIadehIGTAVIGMPYNlkgnyteQT 71  Parcubacteria b...
OGJ56619       3 ILALDLGT-KHTGVAFIDqenvGFVVPLPTINhks---------neeFMHAVQTLItdrkIDRIIVGLPFLlsgkegsQA 72  Candidatus Peri...
OGJ63161       3 LLALDIGT-KRTGVALGEte-sGILVALETIKhrd---------qkeLVKAVEKIIhekkVTKLIVGLPRLpggtegsQA 71  Candidatus Peri...
OGL26470       6 ILGLDVGK-SHTGIARGNml-aKIAEPLSTVKtd------------eVFGTLDKMIdqlgINTVVVGLPRSldgrdteQT 71  Candidatus Sacc...
OGL71746       4 VLGIDFGT-KRLGLAFGDpl-tGVAVPIDTVElhg----------ndPVKVVWGMIerdgYDHVVVGAPSDpt---skLH 68  Candidatus Uhrb...
Feature 1                                #                      #                 
1VHX_A        76 EASQTFAKVLETty-nvPVVLWDERLttxaaekxl-iaadvsrqKRKKVIDKXAAVXILQGYLDS 138 Bacillus subtilis
WP_010880972  69 KLVKDFVEKLREelpntEIILWDERWttaeamrr---leglppkKKKELKDVISAMIILEEYLNS 130 Aquifex aeolicus
WP_015418847  69 KKVKKFYELLKKel-niEIVLQDERYttfe----------akslSDEKEIDHISAYIILKEYAEN 122 unclassified Hydrogenobaculum
AIT41431      86 LIVENVVKIMRQrl-kvPVVLWDERLtt---------------kWAHKRHHCDAAALILQRFFHA 134 Candidatus Hodgkinia cicadicola
KKP38360      75 QKIKQFGEVLAKkt-qiKVNFMDETLstfeaeesmsnfkkdkkdKTSGERDCLSAAIILERWFKG 138 Peregrinibacteria bacterium GW...
KKT34954      72 MFVQQFYTKFKRayptvKVFLEDERYttki----------asrfAKAKNDHSAAAVLILQGFLER 126 Parcubacteria bacterium GW2011...
OGJ56619      73 ALVQKRVKDVETlg--iPISLMDERYssrqtsta--thpkkgrdRSAVDPNAMAAIAILEAFTES 133 Candidatus Peribacteria bacter...
OGJ63161      72 VYVRDVVKKIQMtc-niPVKFIDERFts---------------kGEGSDPDARAACAILETEMER 120 Candidatus Peribacteria bacter...
OGL26470      72 VWTRQWAAKAKHkl-giPIYWQDEALttkkai------shqpsaNSSIDEHALAAVAILQDFLDS 129 Candidatus Saccharibacteria ba...
OGL71746      69 QAVVAFAKQLRNvs-giTVTLVDEHLttniad------qlarehGGASHDDSLAAMLIVEEFLHE 126 Candidatus Uhrbacteria bacteri...

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