Conserved Protein Domain Family
YcbB

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COG2989: YcbB 
Murein L,D-transpeptidase YcbB/YkuD [Cell wall/membrane/envelope biogenesis]
Statistics
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PSSM-Id: 442228
Aligned: 272 rows
Threshold Bit Score: 391.613
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_001005851  73 SELAVLYAANHMQPMWQD--RA----A----VQHFQQQLAELALSGIQPQ-FM-QWVKWLSDPAITG------------L 128
WP_011469366  82 ALLNAYYEETGFAPLWLK--DSg--rAfnsaALDLIAVLQGVDKEGLLPAdYHiAYLGQLITEPse-----------isS 146
WP_081436008  92 valprfYEQRGYSPAWLQ--SG----ApssnCQALVRAIGTAGDHGLNPSeYHlDKIVDLLNEVAANqkakkalnpgrlA 165
WP_015780823  81 TTLYNFYSFRGFRRLWNPlyRDqd------pLQELLAYLQQIHWHGLLANdYHfQTLMErcqip----------tlelvA 144
WP_014422252  55 EALTRFYEARGYTLAWEDps----------nRRELLEAIRAVAGDGLNPRdYHyDTLAALALKdlnds------aeelqT 118
WP_015048296  49 QDTARFYELSGFQYRWSV--NSagvlAlsdeANALFDFLGNIHLEGLLAVdYHyPALQAALARqd-------------wL 113
WP_015403285  56 KKLQSFYQSRDYQSAWTpv-----------lLSQLVTSINNTTSHGLSPCdYRvTLLQNtqt---------------dyL 109
WP_014148931  58 KGLISFYSDRQFSKAWLA--NG----QptpqAYQLMQILNSADQHGLNKSnYHvTAINERLERlkaplne--seililsV 129
WP_008247878  50 DIINSFYINRQFEFAWFT--AN----TlsaqGRVLVSSIAGITKEGLLPLdYHsAKIQTLLNtdap---------tqdvA 114
WP_101893507  66 QALLELYTERGFTPIWLAveESgq-lEpnhsATELLQTISNVGDEGLNASdYHfNAIQDALQDGTs-------------M 131
YP_001005851 129 ARDVILSDAMLGYLH-----FISGVGAngsVWLYSNvpykmamPPATILN-RWQQAVHe-gTtaPYLASLApPQHPQYEK 201
WP_011469366 147 DAELVLTDAFLFLAQhilagKVDPETLt-nEWKPAK-------EVVDARA-LLTKVASn-vPiaDIVQSLR-PRQPRYAR 215
WP_081436008 166 DLEFLLSDSFLIYGAhllggKVNPETIe-pDWTAGK-------READLPA-LLAEALKt-nDveKALKSLA-PQDVAYRS 234
WP_015780823 145 ECDLLQSDAILTLSQhlqigKVNPNLIf-kDTEVTK-------PAINLSE-LLSKAVNm-pNlfDYFRALA-PSSQEYIE 213
WP_014422252 119 DLDLVLSDAFLLLAShlhhgKVNPTTIh-aEWTANR-------QQREMQS-VLSEALAs-gTvyTTLQDLK-PRSAAYHQ 187
WP_015048296 114 AFDLLMTDAHLMLAHhllkgKVDVASLn-aDWVANP-------RTRDLVQhLLP---NggdPvvEKLTALR-PSQARYDR 181
WP_015403285 110 YRELLATDSYFTLAGhllggKVNPVSIe-pSWNAPG-------RENDLPK-YLETSLQe-gNiqESLEALA-PNTQEYKQ 178
WP_014148931 130 DLDLLLSDAFLTYGThllqgQVNPQKLq-sKWDTGR-------RATDMVK-ILSDAIDt-nSieQSLNELM-PKQPGYRS 198
WP_008247878 115 AFDILLSDAFLSLAShlqagKVDPLAListEWEANR-------RHSNLPA-LLQRVADs-gDvaTALDSLR-PKQSRYYR 184
WP_101893507 132 SLDLLLTDAFLTLAQhllsgKVDPEKLt-sEWKSYR-------EYINPKA-LIANL-Dh-qSvaEVLDSVR-PRPPRYRR 199
YP_001005851 202 MHQALKEM--LADRRPWP-QMANGPSLRPGQLSDDIPALREILDRTGMLHP------Vvpapvqtpevipvdnpavavvn 272
WP_011469366 216 LVKTLAWLnsTQA-PDWE-PLALSPAIKKGMADTRLSPIAERLRFWGDLSE------Se--------------------- 266
WP_081436008 235 MQDLLKQLraAAPQPSVR-LVQTAPSFKLGYRGPQTAALRARLAAAGFLGQ------Ds--------------------- 286
WP_015780823 214 LRKYLAELrsr-tvSPWP-AIDLQPSIKPQMADPRLEAIAVRLMFWGDLPA------Dwa-------------------- 265
WP_014422252 188 LVQRRKALgeLIS-ADWP-AIVSGPSIRPGDTDNRIPDIRRRLALLGDLSG------Dsp-------------------- 239
WP_015048296 182 LLSRLAWLteHPA-SEWP-ALAVSPKIEPGASDARLASIAQRLRYWGDLSD------Ed--------------------- 232
WP_015403285 179 LKLALAHYrkISSQGGWG-QIASGPLLKLGSHGERVIQIRERLKAGGELIT------Dt--------------------- 230
WP_014148931 199 LVRALADYraIKDRGGWP-SVTEGPSLRPNEKNPRIIELRKRLVASGDLAN------Dv--------------------- 250
WP_008247878 185 LKIALAKVsaLSNLa-WQrPLAEAPVLKPNTSDNRIPAITERLKVWGDLHSgpglesDgpa------------------- 244
WP_101893507 200 LIKALAMLkdLPS-DNWG-PLALSPAIKPNQQDDRLPEITRRLTVWGDLEA------Gf--------------------- 250
YP_001005851 273 ddlsvdeeksraqahslvvspsaapvadtpvtsgvvapssapvtatVT-DNVYTPELMEAVKRFQRWHGLSDDGVIGART 351
WP_011469366 267 ----------------------------------------------ET-FTHYEGELMEAVTRFQRRHGLEPDGVVGKNT 299
WP_081436008 287 ---------------------------------------------eQD-KEVFNESLEAALKKFQASWGLEADGVCGPAT 320
WP_015780823 266 --------------------------------------------ylAPfPMRYEDGLIRAVEHFQLRHGLVADGVLGKKT 301
WP_014422252 240 --------------------------------------------eaSN-HQHYDDALATAIPLFQARHGLEPDGIVGRDT 274
WP_015048296 233 ----------------------------------------------RL-FNQYASELVDAVKRFQMRHGLKQDGVIGKAT 265
WP_015403285 231 ---------------------------------------------dQD-PAEYTTSLQEGVQRFQKRINLEADGKVGPNT 264
WP_014148931 251 ---------------------------------------------aLD-NIEFDQSLQQAVKYFQKRHGLETDSIVGRAT 284
WP_008247878 245 --------------------------------------------ddES-PLMYTPALAEAVKVFQRRHGLEADGIIGRET 279
WP_101893507 251 ----------------------------------------------YS-DETYNQALNAAVIRFQTRHGLDADGIIGKNT 283
YP_001005851 352 REWLNVSPQTRATLLALNIQRLRILPGRV-DNGIMVNIPNYSLNYYKNGTQVLSSRVIVGRPSRKTPLMSSALNNVVVNP 430
WP_011469366 300 LLALNVSPVQRANDVVVNLERWRWLDQNMgDYFIVVNIANFDLRVYKSNELVMQKPVIVGRNYRKTPVFSDKIRFLVFNP 379
WP_081436008 321 LHAVNRSEKDNIAAIRANLERWRWMPQNLgDRHILVNIADFHLAVVENGEELLAMKAIVGKLYRKTPVFSGRLTYLVISP 400
WP_015780823 302 IAALNITPQQRIEQLVVNLEQIRWHELKPaSRLIKVNIPSFELLALENGEVRLRMPVIVGQLKRKTPIFEEKIQYLVLNP 381
WP_014422252 275 LTALNLLPLERIYRLDANLERWRWLPESLgETYVVVNIAGFELVLVESGEQVHRQRVIVGRPYRQTPVFSDRIRYLVFNP 354
WP_015048296 266 LTQLNVTPAERARQLVANLERWRWLGEDFgHRFLLVNIADFSLTVYEAGQPAVRMPVIVGRHYRKTPVFSDRMRYLVFNP 345
WP_015403285 265 LRNLNKTPEDRINTLRVNMERWRWLPENLgDRHLRVNIAGFFLEAYDHGMPVRRHNVIVGTDYRQTPVFSDAIEYMILNP 344
WP_014148931 285 LEALNVSVDHRIAQIRANLERWRWLPEDLgARHIMVNIAGFALDFVGNGEVLLHMPVIVGKTYRETPIFTGSMTYLVINP 364
WP_008247878 280 IKAINISPEERAKQIIVNMERWRWLAADLgDKHLLVNIAAFELKIIDNNETVFVKPVVVGRNYRKTPVFSNKIRYLVLNP 359
WP_101893507 284 LTALNLSPADRANQIVVNLERWRWLDQNMgDSFIVVNIANFDLRVFNQGELVMQMPVIVGRNFRKTPVFSDKIRYLVLNP 363
YP_001005851 431 PWNVPTSLVRQDIVPKARYDSSYFQRHGYTVLSgwsndaEVVDPSMIDWSMISpNNFPYRLRQAPGASNSLGRFKFNMPS 510
WP_011469366 380 TWTVPQKLAVQDKLPEIKKDISYLEKYGFTLYAlg--enTVVNPADVEWDKLH-KRFPYRMVQAPGPLNALGQVKFMFPN 456
WP_081436008 401 YWDVPPSIARKDKLPLMQKDPNYFTANHFLVYQgwgadsREIDPASVDWKALGpNNFPYRLRQKPGPGNALGRIKFMFPN 480
WP_015780823 382 TWVVPWELATKDKLPLIQQNPQYLLDNQFSVYLqd---fKIEDPTRIDWAQVTrANFPYRLVQAPGSGNALGQVKFMFPN 458
WP_014422252 355 TWTVPRKLMIEDQLPIIRSDPEYLERLGFKVFRgwganqSEVDPAEIDWTELSkNNFPYQLIQQPGPQNALGQVKFMFPN 434
WP_015048296 346 TWTVPVKLAVQDKLPDIQKDPDYLSRMGFKVYPhg--sqVEVDPGTIDWATLTpRNFPYRLVQMPGPLNALGQVKFMFPN 423
WP_015403285 345 WWYAPRKLAVKDKLPLFRNDPGYFERSGFQLVDkd---sKRVDQRTVEWNRLSeNNFPYQLRQMPGPKNALGRVKFIFPN 421
WP_014148931 365 SWYVPNSIAVKDKLPILARDPYYIERNHMKLYRgwganrTEINPLSVNWRQVNpNNFPFRLVQKPGPKNAMGKVKFMFPN 444
WP_008247878 360 TWTVPYKLAVQDKLPDIQKDPGYLNRLGIRVFRgd--saVAIDPYTIHWNEITtRNFPFRLVQGPGPQNALGQVKFMFPN 437
WP_101893507 364 TWTVPQKLAVQDKLPEIKKDISYLKKYGFTLYDfg--snNVVNPENVDWARLH-KQFPYRLVQSPGPLNALGQVKFMFPN 440
YP_001005851 511 SDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQ--D-AGWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTA 587
WP_011469366 457 AYDVYLHDTPSRELFSKTERAFSSGCIRVSDPIELASKLLE--Pn-GMGIDQINEVLSSAKTTTVNLKTPVPVHIEYWTA 533
WP_081436008 481 KHNVYIHDTPSHDLFAKSQRNFSSGCIRIQDPIGLAEYLLK--DaPGWNREAIEDAVDNKIEKTVSLSRPIPVHIMYFTA 558
WP_015780823 459 PYEVYLHDTPDKSLFNNELRAFSSGCIRIQRPLDLLWWILR--Tn-GFSDIDIENQLNKKHTNTISLTSPVPIRLEYRTA 535
WP_014422252 435 QYDIYLHDTPAQSLFSRLERTLSSGCIRLERPFELAERLLA--NtNGWNKKRIEQTLATAEPATVVLSEPVPVYLQYWTT 512
WP_015048296 424 RYDVYLHDTPARELFQEEDRAFSSGCIRVADPMALAEYLLA--Dq-GIDRATIDQWLAEGAIKTVNLKTAMPIHIEYWTA 500
WP_015403285 422 RYNVYLHDTPSTELFAKVQRLFSSGCIRVENPLDLAEWLLSfqReTGWSREKIEEVVESGKETRINLSAPMPVHLLYWTV 501
WP_014148931 445 PHNVYLHDTSEPSLFNRVDRTFSSGCIRVGKPFALANLVLE--NnSRMTPDAIREAFDQSDQKTVTLLNPIPVHILYWTA 522
WP_008247878 438 PHDVYLHDTPSRELFKKAERAFSSGCIRVSDPLELAEFLLR--Dq-GWDKERIAASIAKGVTETVSLKTPLPIHIEYWTA 514
WP_101893507 441 SYDVYLHDTPSRDLFSKNERAFSSGCIRVSKPIELAELLLR--Pq-GMTAEDINQILAAPNNVTLNLKQTMPVHIEYWTA 517
YP_001005851 588 WVAD-DGKPQFRTDIYNYDMTVRSGSQIsH 616
WP_011469366 534 WVDS-SGKLQFRNDIYERDKPLFSALTL-P 561
WP_081436008 559 FGDT-RGAVHFRNDIYGRDARLLEALDS-L 586
WP_015780823 536 YWGL-DQTIQFRADIYQRDTKLYQALQQ-P 563
WP_014422252 513 WIDP-AGVLQFRNDVYDRDRRLLQALRA-D 540
WP_015048296 501 WVDR-EGTLHFRKDVYNRDAPLIAALAQ-P 528
WP_015403285 502 LCDSvNSEIRFIEDQYQRDPRILEALDT-L 530
WP_014148931 523 WVDL-EGVVQFRRDIYNRDDELIQKLQK-S 550
WP_008247878 515 WVDR-QGVLNFRNDIYERDQPLWQALNK-P 542
WP_101893507 518 WVDD-QGTLQFRTDIYERDNPVLEALKQ-P 545
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