Conserved Protein Domain Family
AFD_YhfT-like

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cd17633: AFD_YhfT-like 
fatty acid-CoA ligase VraA
This family of acyl-CoA ligases includes Bacillus subtilis YhfT, as well as long-chain fatty acid-CoA ligase VraA, all of which are as yet to be characterized. These proteins belong to the adenylate-forming enzymes which catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain
Statistics
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PSSM-Id: 341288
Aligned: 7 rows
Threshold Bit Score: 434.14
Created: 3-Feb-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                                       ##                               
O07619       143 HPFYMGFTSGSTGkPKAFTRSHrSWMESFTCTETdfsissDDKVLIPGALmsshFLYGAVSTLFlGGTVCLLkkfs---p 219 Bacillus subtil...
Q5HRH4       124 NVIHIGFTSGTTGlPKAFYRNEhSWIVSFKENEKllq-hcEETIVAPGPLshslSLYACIYALStGKTFIGQknfn---p 199 Staphylococcus ...
Q4L3Q0       129 DLLHIGFTSGTTGlPKAYYRNEpSWIASYVENEKliy-nyEKALAAPGPLahslSLYTCIYALYsGRTFIGQrqfd---a 204 Staphylococcus ...
Q6GJ94       127 NLLHIGFTSGTTGlPKAYYRDEdSWLASFEVNEMlml-knENAIAAPGPLshslTLYALLFALSsGRTFIGQttfhperl 205 Staphylococcus ...
YP_037702    216 APFYMGFTSGSTGkAKAFLRAQqSWLHSFDCNVHdfhmkrEDSILIAGTLvhslFLYGAISALYvGQTVHIMrkfi---p 292 Bacillus thurin...
YP_427604    129 RPFYVGFTSGTTGlPKAYARSHrSWIETMVAGRDgfaldaADRILVLGPLvhslALYGALQALWlGGAAIVDgm------ 202 Rhodospirillum ...
YP_001089487 148 SICMGALSSGSTSvPKVLYRTYkSWAGFFPIQNDifnisgESILFVNGTLsftgNLNSIMSVLYeGGSIVISsgln---c 224 [Clostridium] d...
Feature 1                          # ##  #                 ##                        ######      
O07619       220 akaKEWLCRe-sISVLYTVPTMTDALariegfpdsPVKIISSGAd-wPAESKKKLaaaw---phlKLYDFYGTSELsFVT 294 Bacillus subtil...
Q5HRH4       200 lslMRLINQlnkATAIFVVPTMVQQListq-rhcsSIKSILSSG---AKLTLQQFqqistlypqaNLIEFFGTSEAsFIS 275 Staphylococcus ...
Q4L3Q0       205 krfISILNEqhsNIALFLVPTMLHQLlnvd-ttitHIKSIFCSGaklSESLFKTVsqqf---knaNIIEFFGTSEAsFIT 280 Staphylococcus ...
Q6GJ94       206 lnqCRKISSy--KVAMFLVPTMIKSLllvy-nnehTIQSFFSSGdklYSSIFKKIknqa---ndiNLIEFFGTSETsFIS 279 Staphylococcus ...
YP_037702    293 nqvLDKLETe-nISVMYTVPTMLEALykenrvienKMKIISSGAk-wEAGAKEKIknif---pyaKRYEFYGASELsFVT 367 Bacillus thurin...
YP_427604    203 -ggWGVDQG---ATVVIGVPPLLAALartg--phsAIRTVLSSGqalDPTTEAVLrrgf---pkaVLVDFYGTSEQsFIA 273 Rhodospirillum ...
YP_001089487 225 kswIRTIKQy-nVTNIYLIPTKLQLLvrhlkepvlKVVSIFTGSqllFEDTARNLkkym---pksEIILYYGASELnYIT 300 [Clostridium] d...
Feature 1                                                                               #        
O07619       295 FSSpedskrkphSAGRPFhNVRIEIRNaggercqpgeiGKIFVKSpmrfsgy------vngstpDEWMTVDDMGYVdeEG 368 Bacillus subtil...
Q5HRH4       276 YNFnqss--pahSVGKLFpHVETRLLNqdd-----davGLLAVRSemvfsgy-----vgqsnqeGSWIKTGDFAYIk-NQ 342 Staphylococcus ...
Q4L3Q0       281 YNFnqts--ptnSVGQVFpNVSIKLEAqdn-----rkiGLLKVQSnmiysgyv----dvgvvqpHSWIETGDYAYIq-NN 348 Staphylococcus ...
Q6GJ94       280 YNLnqqa--pveSVGVLFpNVELKTTNhdh-----ngiGTICVKSnmmfsgyv----seqcinnDEWFVTNDNGYVk-EQ 347 Staphylococcus ...
YP_037702    368 ALVdeeserrpnSVGKPChNVQVRVCNeagkevqkgeiGTVYVKSdqffmgyiidgvlarelnaDGWMTVRDVGYEdeEG 447 Bacillus thurin...
YP_427604    274 WRAvgee-atrgTVGRPFaGVEAEIRDaegrpvapgvqGRLHVKSpmvfdgylegldrggfsskDGWSSVGDLGWLgeDG 352 Rhodospirillum ...
YP_001089487 301 YLCydeliekplSVGRPFpGIDIYIRE-----------GKIFVNTeyav------------ynvTKPYSVNDIGYYdnDG 357 [Clostridium] d...
Feature 1           #  #       ####                                                           #  
O07619       369 FLYISGRENGMivYGGLNIFPEEIERVLLACPeVESAAVVGIPDe-yWGEIAVAVIlg--naNARTLKAWCKQklasYKI 445 Bacillus subtil...
Q5HRH4       343 HLFLVGRESDRiiVGGINVYPTAIESLIMDIEgIDEALVIGIPHa-kFGEIAILLYsgkvqlNYRQIKSFLMKqlsrQEV 421 Staphylococcus ...
Q4L3Q0       349 QLYLVSRKSDRliIGGKNIYPNVIEQQVKSLDgIEEAVVVGEPHr-rFGEIAVLIYvgnqelDYTTLRRYLRQtlsrYEI 427 Staphylococcus ...
Q6GJ94       348 YLYLTGRQHDMliIGGQNIYPAHVERLLTQSSsIDEAIIIGIPNe-rFGQIGVLLYsgdvtlTHKNVKQFLNKkvkrYEI 426 Staphylococcus ...
YP_037702    448 FIYIIGREKNMilFGGINIFPEEIESVLHEHPaVDEIVVIGVEDs-yWGEKPVAIVkg--saTRQQLKRFCLQrlssFKI 524 Bacillus thurin...
YP_427604    353 TLTLAGREGGMvvVRGVNVFPQEVEAALKALPgILDAGVVGLPDa-gRGALLVALVege-gvVDPAALGALRP----EKR 426 Rhodospirillum ...
YP_001089487 358 YLIFEGRSDDIinIGGFKVSSTKIENEVKKIPqIEDAIVLPYSDtirGNQIVLFVItid-kiTKKDLLIKMKDnlmkNEI 436 [Clostridium] d...
Feature 1                            
O07619       446 PKKWVFadslPETSSGKIAR 465 Bacillus subtilis subsp. subtilis str. SMY
Q5HRH4       422 PSKLKKidhmIYTESGKIAR 441 Staphylococcus epidermidis RP62A
Q4L3Q0       428 PSKLVRvkdlPFTNSGKVAR 447 Staphylococcus haemolyticus
Q6GJ94       427 PSMIHHvekmYYTASGKIAR 446 Staphylococcus aureus subsp. aureus EMRSA16
YP_037702    525 PKEWYFvdeiPYTNSGKIAR 544 Bacillus thuringiensis
YP_427604    427 PRRIIGvsalPRTLTGKIDR 446 Rhodospirillum rubrum
YP_001089487 437 PKKIIFlnsfPYTSSEKIDR 456 [Clostridium] difficile

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