Conserved Protein Domain Family
DnaD_dom

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TIGR01446: DnaD_dom 
DnaD and phage-associated domain
This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]
Statistics
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PSSM-Id: 273630
Aligned: 19 rows
Threshold Bit Score: 67.3245
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAK81510     205 IRKVLDYLgIKDAeIMKPQEQMLTKWLESFSFP-------LDVIFRACDICFEr-INKADFKYIDAILTNWFKAGIKTLV 276 Clostridium ace...
AAG15562     150 LSDIYQEN-FG-M-ASSLIIENIKYDLEDFG---------FDLVKEAMTRAA---LDKKSYRTAQNILKDWQRKGVKTLQ 214 Lactococcus pha...
CAC95319     157 FKDFWEQNgFG-M-MLPIEQEKLLAWVDDFSGN-------REIVFKALEVTSEqgANKRNYAYVNKILRNWEERGFKTVA 227 Listeria innocu...
AAK81510     121 MLQDIEKL-LGRT-LSPKEMSTYIGWQKEFSFS-------PELILLLIQYAVS--KGKTNYRYIEKIALSWHDSKIKSIE 189 Clostridium ace...
CAC28357     162 IVEEYQSR-IA-P-LDGTQFEILKEFITLDGME-------AKVVLKAIGLAAD--NGKRNFSYIRAILTNWKNDGVLTIA 229 Neisseria gonor...
CAC96475     198 AYKFWEEN-VAITgLSEFDRELLKKLISLGGN---------ELTVHAMKKAIE--LNRRRMKTVDTVLRGWLDNGVKTTA 265 Listeria innocu...
EHE68554      40 LLNMKRAE-TGKA-LSPLQIQELQYMLEDFS---------PELIHEALKEAVS--QGKANFAYIKVILNRWKQDNLLTVE 106 Streptococcus p...
EEU81957     140 IYHFYEEN-GFGT-LASKTSQDFKYWLQDFIQKgasqeeaCQLILHALGIAVD--RNKRNYGYVNAILKSWEQQNYLSVH 215 Enterococcus fa...
WP_010708127 193 LIAYYSKN-VS-L-ATPVNMTNLAYDLKDFNGD-------LDLLKEAINIC-S--SNVKTYAYFAGILKQWRANGINTHA 259 Enterococcus fa...
WP_010899671 169 PVTFYESN-FG-M-LSPFQMEQIVMMREENSD---------ELVLAAMKLALK--KNKKHLSYVEGILKIWRENNVKTVA 234 Bacillus halodu...
AAK81510     277 DVDT 280 Clostridium acetobutylicum ATCC 824
AAG15562     215 DVEA 218 Lactococcus phage TP901-1
CAC95319     228 DVNA 231 Listeria innocua Clip11262
AAK81510     190 DAQT 193 Clostridium acetobutylicum ATCC 824
CAC28357     230 AVDE 233 Neisseria gonorrhoeae
CAC96475     266 EADE 269 Listeria innocua Clip11262
EHE68554     107 LVRN 110 Streptococcus pneumoniae EU-NP01
EEU81957     216 EVLv 219 Enterococcus faecalis D6
WP_010708127 260 DFLk 263 Enterococcus faecalis
WP_010899671 235 DARA 238 Bacillus halodurans
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