1WGK,2PKO,1XO3,2QJL,2AX5,2K9X,4IDI


Conserved Protein Domain Family
Ubl_Urm1

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cd01764: Ubl_Urm1 
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ubiquitin-like (Ubl) domain found in ubiquitin-related modifier 1 (Urm1)
Urm1 acts as a sulfur carrier in the thiolation of eukaryotic tRNA via a mechanism that requires the formation of a thiocarboxylated Urm1, which is similar to that of prokaryotic sulfur carrier proteins such as ThiS and MoaD, containing the beta-grasp ubiquitin-like (Ubl) fold. Urm1 can be covalently conjugated to lysine residues of other proteins through a mechanism involving the E1-like protein Uba4. Urm1 is involved in yeast bioprocesses such as budding, nutrient sensing, high temperature sensitivity, antioxidant stress response and post-translation modification of the elongator subunit.
Statistics
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PSSM-Id: 340463
Aligned: 48 rows
Threshold Bit Score: 96.441
Created: 9-Jun-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1WGK_A        14 VKVEFGGGAELLFdgvKKHQVALpgqeepwDIRNLLVWIKKNLLk--ERPELFIqg------------------------ 67  house mouse
2PKO_A         4 VKVEFLGGLDAIFgkqRVHKIKMdke-dpvTVGDLIDHIVSTMInnpNDVSIFIed------------------------ 58  baker's yeast
2QJL_A         4 VKVEFLGGLDAIFgkqRVHKIKMdke-dpvTVGDLIDHIVSTMInnpNDVSIFIed------------------------ 58  baker's yeast
2AX5_A         4 VKVEFLGGLDAIFgkqRVHKIKMdke-dpvTVGDLIDHIVSTMInnpNDVSIFIed------------------------ 58  baker's yeast
4IDI_A        24 IELKFLGGLESYLedkSKNYVTLeidskelNFENLIAFIRDNII---EKKFVFSdydivsadeklckvxvdnkeysnynl 100 Plasmodium yoel...
CBY11291       3 VTLEFCGGAETAHn-rGEKFLTFksenkepKVSDIFAQVRRKKLi--DDIDALIes------------------------ 55  Oikopleura dioica
EAK90632       4 IKVEFSGGLEVLAgdrQNVEVNLnnl-kssSMKSLILYVEENIIq--YRKDHFIet------------------------ 56  Cryptosporidium...
NP_587744      3 IKVELLGGLDLLFnkqKALSLSLsnl-gstKLGSLIDYMAQIIEk-pSQKDLFIln------------------------ 56  Schizosaccharom...
NP_001255080   6 VTIDFSGGAEFLVk-aKAQKVQIpa---dsTLRDVLKFVRDNLVtdvHRINMLLndd----------------------- 58  Caenorhabditis ...
XP_657081      3 VKIELSGGLEYDAk-tTHFEIEIgn---ikTMRDVIHKIKEIQT---GLAPIFTe------------------------- 50  Entamoeba histo...
1WGK_A        68 ---dSVRPGILVLINDADWELLGElDYQLQDQDSILFISTLHGG 108 house mouse
2PKO_A        59 ---dSIRPGIITLINDTDWELEGEkDYILEDGDIISFTSTLHGG 99  baker's yeast
2QJL_A        59 ---dSIRPGIITLINDTDWELEGEkDYILEDGDIISFTSTLHGG 99  baker's yeast
2AX5_A        59 ---dSIRPGIITLINDTDWELEGEkDYILEDGDIISFTSTLHGG 99  baker's yeast
4IDI_A       101 kdkaKIKPGIIVLVNEYDWEILGTySYQIKNDDKICFLSTLHGG 144 Plasmodium yoelii yoelii
CBY11291      56 --dkDVKPGVLVLINDADWELFNEaEYQVCKNDRITFVSTLHGG 97  Oikopleura dioica
EAK90632      57 --gsKIKPGIIVLVNNCDWEILGGeNYALSDGDLVTFIMTLHGG 98  Cryptosporidium parvum Iowa II
NP_587744     57 ---gTVRPGIIVLVNDQDWELLEKeEYNLEEGDEVVFVSTLHGG 97  Schizosaccharomyces pombe 972h-
NP_001255080  59 --asEVAHGVITLINDTDTGLLLEyDTVIEAGDTITFVSTLHGG 100 Caenorhabditis elegans
XP_657081     51 ---eSVIPGIIVLINDADWELVGMlDSEVHDGDVISLISSIHGG 91  Entamoeba histolytica HM-1:IMSS
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