Conserved Protein Domain Family
PBP2_SsuA_like_6

?
cd13563: PBP2_SsuA_like_6 
Putative substrate binding domain of sulfonate binding protein-like, a member of the type 2 periplasmic binding protein fold.
This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
?
PSSM-Id: 270281
Aligned: 25 rows
Threshold Bit Score: 227.888
Created: 9-Mar-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the ABC-type nitrate/sulfonate/bicarbonate transporter family.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1            #                               #                                        
EDX86506   54 SLTMGSIPWAGQvPMYIAQDKGYYEee-glDFELRLFGsGSEYIAAFLsdQLDAVAPvtSEAVLIksqg--kdfKIVMVQ 130 Synechococcus sp. ...
ADV11761   32 SLKLGMTTWVGYgPLFLARDMGYFKeg-glDVSLEIIEeASLYMAAVAagELDGSAStvDEIMKYrskd--vcfKSVYAL 108 Mesorhizobium cice...
AEF93915   42 KIKVGYNTWVGFsGFFTALDKGYFTqk-glEVEPVAFTgPVESMTALMsgKIDVALTtlDTAVIMsdkpetnkpKVVFVV 120 Desulfotomaculum c...
YP_960921  27 HLRTGIHPWIGYePLYLAEEFGWLPe----TVQLVKGQgASDSISGLVsgNLDAAALtlDETLRVlaag--vpvKAVAVT 100 Marinobacter aquae...
AEF55548   33 TISLGHTTWVGYgTLYLAKDLGYFEek-glNLELTTIEeSSMYMAAAAsgRLDGSAStiDEILKYrpk---fcfKSVAVL 108 Marinomonas sp. IV...
AEF45159   39 TFKMGIEPWLGYgQWHVANSLELFKqqgldKVDIINFAeDKDINAALAsgQIDAANIatHTAMGMvsag--lpvKIVLLL 116 Serratia sp. AS9
EGN33137   55 KLSLGTSPWPTNmFFYLAKEKGIFEkn-giDVTIQEFAsTTESSNAFVggQIDFCTYasSETIAPfaqg--aefSVVLET 131 Lachnospiraceae ba...
AEA83927   32 RLKIGTVVWAGYgPFYVADKLDLFKph-glDVDLQFFNdPALIPTAMVsrALDGGMLtyDQVVASvakg--lrhRVVMPI 108 Pseudomonas stutze...
NP_107495  40 PFKIGIEPWLGYgQWHVADAKGLFKanglsDVQIVNFAeDKDINAALAsgQLDAANIatHTAMGMvaag--lpvKIVLLL 117 Mesorhizobium loti...
NP_886642  34 AVRYGGSAWLGHyPAWLAIQAGYFKae-nlEVGWESFGtTSARVSALLsgNIDMAVTaaPAALAVmsrg-srhfAIIGVP 111 Bordetella bronchi...
Feature 1           #                     #    #                                          ##  
EDX86506  131 DNsvgiDGILARDsitsIEDFRGKRVAVETSaVGYFFLLQVLKEAGls-kdDITAINTepsaAAAAFQSGnVDIAVTYaP 209 Synechococcus sp. ...
ADV11761  109 DDshggDGVLAPSgvksIADLKGMDVALNEGsVSQFWFNILLKQAGlt-qaDVKITNMtaddAAAAFMADrIPVAVTWeP 187 Mesorhizobium cice...
AEF93915  121 DGsngaDGIVVKPeiktVSDLKGKQVGATIGqVNHFLLLKALEKGGlt-dsDVNLVNMnsdvAGAAFMAGkLDAAVTWeP 199 Desulfotomaculum c...
YP_960921 101 NVsvgaDVLLVRPaitsLSDLQGRRVAVELGgVSGIMLFSVLERAGlt-snNISVVNLpvheHIGAWQRGdIDASISYeP 179 Marinobacter aquae...
AEF55548  109 DDsfggDGILVEDginsIADLKGKTVAVNEGsVSQFWLSDLLKSEGms-msDITVQNMtaddAASAFIAGrVPVAVTWeP 187 Marinomonas sp. IV...
AEF45159  117 DQsqtaDALIVGPgiktLSDLKGKQVAYEEGtTSDILLHSALASAGmk-wsDIVPVPMpadaAGSALIAKrVSAAVTYeP 195 Serratia sp. AS9
EGN33137  132 DKsngcEGLVATSdiknITDLKGKTIATQLYsVDHMFLLTLLEENGms-ekDIKIVDMsiqeSGNAFVAGqCDAACIWdP 210 Lachnospiraceae ba...
AEA83927  109 DFsnggDAIVADAsiqsIADFKGKKVGFNPLsPSDFLLAYALQQNGms-dkDIDAVNMtpegIPGAMASGnLPVGVTYeP 187 Pseudomonas stutze...
NP_107495 118 DVsmtaDAIIAGKdvtsIADLKGKQVAFEEGtTSDILLKYALARNGms-iaDVQPVPMpasdAGGALIAGrVPVAVTYeP 196 Mesorhizobium loti...
NP_886642 112 ENfgrvEGLIVRSqvarLEDLKGKKVGVTFAsSAHLLVLNLLDQAGlkagkDVTVLNVpapeLPAAFQSGqIDAAAAWtP 191 Bordetella bronchi...
Feature 1     #                                  #                          
EDX86506  210 FLQEAADAte--dGRIIYDSSq-----mPTAI--SDLYVFDTafaeeNPQTVQAFVNATLRG 262 Synechococcus sp. PCC 7335
ADV11761  188 HLTLAKKEn---kGQVLIDSSk-----tPGLI--VDVVALNCdyitkNPGDVEALVKGLYKA 239 Mesorhizobium ciceri biovar biserrul...
AEF93915  200 YLSNATNNg---kGKILFSSAd-----aPGVI--MDVAVISGngvkeSGEWISKFVQAMNEG 251 Desulfotomaculum carboxydivorans CO-...
YP_960921 180 EASRLVAEg---aVRLFDSSQl------PETI--FDLLVVTDaaasrQPAAVRDLVKGHFLG 230 Marinobacter aquaeolei VT8
AEF55548  188 NLSYVRSHn---vGKVLVDSSa-----tPGVI--VDVVALNCdvienQPEDVKALVDGLYRA 239 Marinomonas sp. IVIA-Po-181
AEF45159  196 YLSMAKKQda--dVKMLYSGEs-----dPGLI--SDVLVVRDeviksRPGQVAAMIKSWDAA 248 Serratia sp. AS9
EGN33137  211 YFSQAKEAg----GTELFSSAd-----nPDLI--TDVLLASKslcteNPDAVTAVIKSYFDA 261 Lachnospiraceae bacterium 3_1_57FAA_CT1
AEA83927  188 NVSQILSMgggdkFKVVYSSKd-----aPGLI--TDVLVFDEaviakKPAAIKAMIQGYLDG 242 Pseudomonas stutzeri DSM 4166
NP_107495 197 YLTVAMAQn---kDVKLLFSAge----dPGLI--SDVLVVRDeviksRPGQVLAMIKSWDAA 249 Mesorhizobium loti MAFF303099
NP_886642 192 QFNAIRAMp---dAKVLVDDTsfslykeYGVTpgPDVLVARRafldkNPEAVKRFLKAYFRA 250 Bordetella bronchiseptica RB50

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap