6NVM,6RBD,6YMV,1QYR


Conserved Protein Domain Family
RrnaAD

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pfam00398: RrnaAD 
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Ribosomal RNA adenine dimethylase
Statistics
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PSSM-Id: 395321
Aligned: 11 rows
Threshold Bit Score: 239.574
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6NVM_A        41 RDRNRRQFGQNFLRDRKTIARIAETAELR------PDLPVLEAGPGEGLLTREL-ADRA--RQVTSYEIDPRLAKSLREk 111 Saccharopolyspo...
Q9US51        26 NLNGRSSYKSSYLVNQNLMDEALVKSNLLkey-nsEKMTILEMAPGPGVTTTSL-FNYFqpKSHVVLESREVFSKPLQK- 102 Schizosaccharom...
WP_015431539   4 kklpvRFTGQHFTIDKVLIKDAIRQANIS------NQDTVLDIGAGKGFLTVHL-LKIA--NNVVAIENDTALVEHLRKl 74  eubacteria
Q5HNP6         1 MNQKNPKDTQNFITSKKHVKEILNHTNIS------KQDNVIEIGSGKGHFTKEL-VKMS--RSVTAIEIDGGLCQVTKEa 71  Staphylococcus ...
EQC76595       1 -mNKNIKYSQNFLTSEKVLNQIIKQLNLK------ETDTVYEIGTGKGHLTTKL-AKIS--KQVTSIELDSHLFNLSSEk 70 
6RBD_y        27 VFKFNTDLGQHILKNPLVAQGIVDKAQIR------PSDVVLEVGPGTGNLTVRI-LEQA--KNVVAVEMDPRMAAELTKr 97  Saccharomyces c...
6YMV_B        24 ISKLKFFYGFKYLWNPTVYNKIFDKLDLTktykhpEELKVLDLYPGVGIQSAIFyNKYCp-RQYSLLEKRSSLYKFLNAk 102 Saccharomyces c...
P87250        14 ANKIHTSYGSQFEKNPKVINQILDKLNLEsyy-ksESLQILDIYAGPLIQSVIL-NERLkpKKHVLLEDRLKFVELYQAt 91  Kluyveromyces l...
P37468        19 GFSFKKSLGQNFLIDTNILNRIVDHAEVT------EKTGVIEIGPGIGALTEQL-AKRA--KKVVAFEIDQRLLPILKDt 89  Bacillus subtil...
1QYR_A         1 ---------QNFLNDQFVIDSIVSAINPQ------KGQAMVEIGPGLAALTEPV-GERL--DQLTVIELDRDLAARLQTh 62  Escherichia coli
P44749         8 GHTARKRFGQNFLHDTSVIQGIVAAIYPQ------PNQFLVEIGPGLGALTEPV-GELV--DHLTVVELDRDLAERLRHh 78  Haemophilus inf...
6NVM_A       112 lS---GHPNIEv-VNADFLTAEPPP-----------------------EPFAFVGAIPY-GITSAIVDWCLE-------A 156 Saccharopolyspo...
Q9US51       103 -LctlSDGRIKw-VHQDGYYWQTYEdvyvskvldpriqteeeqklsphRELLFFAHLPHgYAGLLFVSQILDflsardwL 180 Schizosaccharom...
WP_015431539  75 fS---DARNVQv-VGCDFRNFAVPK-----------------------FPFKVVSNIPY-GITSDIFKILMF-------E 119 eubacteria
Q5HNP6        72 vN---PSENIKv-IQTDILKFSFPKh----------------------INYKIYGNIPY-NISTDIVKRITF-------E 117 Staphylococcus ...
EQC76595      71 lK---LNTRVTl-IHQDILQFQFPNk----------------------QRYKIVGSIPY-HLSTQIIKKVVF-------E 116
6RBD_y        98 vRgtpVEKKLEi-MLGDFMKTELPYf------------------------dICISNTPY-QISSPLVFKLIN-------Q 144 Saccharomyces c...
6YMV_B       103 fE----GSPLQi-LKRDPYDWSTYSnlideerifv---pevqssdhinDKFLTVANVTg-EGSEGLIMQWLScignknwL 173 Saccharomyces c...
P87250        92 ----lKDHPSMvnYNKNPYKWETFLemtnedrvlt---psmqkrdhihNEFLIAANLTn-KKGEQLYVQYLQcianqnwM 163 Kluyveromyces l...
P37468        90 lS---PYENVTv-IHQDVLKADVKSvieeq--------------fqdcDEIMVVANLPY-YVTTPIIMKLLE-------E 143 Bacillus subtil...
1QYR_A        63 pF---LGPKLTi-YQQDAMTFNFGElae-----------------kmgQPLRVFGNLPY-NISTPLMFHLF--------S 112 Escherichia coli
P44749        79 pF---LHQKLTv-IETDAMQFDFGAlytken------------laekgQKLRVFGNLPY-NISTPLMFHLFK-------- 133 Haemophilus inf...
6NVM_A       157 PTI--ETATMVTQLEFARKRTGDYG--RWSRLTVMTWPLFEWEFVEKVDRR----------------------------- 203 Saccharopolyspo...
Q9US51       181 GIFgrVRVLLWLPCSPTVTLLGSRGfsKRSKTSVFREAFTDSRVLAASESTlqklcmgyskeakenyqispnpllvsptp 260 Schizosaccharom...
WP_015431539 120 SLGnfLGGSIVLQLEPTQKLFSRk---LYNPYTVFYHTFFDLKLVYEVGPE----------------------------- 167 eubacteria
Q5HNP6       118 SQA--KYSYLIVEKGFAKRLQN-----LQRALGLLLMVEMDIKMLKKVPPL----------------------------- 161 Staphylococcus ...
EQC76595     117 SHA--SDIYLIVEEGFYKRTLD-----IHRTLGLLLHTQVSIQQLLKLPAE----------------------------- 160
6RBD_y       145 PRPp-RVSILMFQREFALRLLARPGdsLYCRLSANVQMWANVTHIMKVGKN----------------------------- 194 Saccharomyces c...
6YMV_B       174 YRFgkVKMLLWMPSTTARKLLARPGmhSRSKCSVVREAFTDTKLIAISDANelkgfdsqcie-------ewdpilfsaae 246 Saccharomyces c...
P87250       164 QRFglVKMLVWIPQQTARKLFAPFSnkDRNRLTLLSELATNTKLVATSENSvkkflpdciek--------fdpviipsdn 235 Kluyveromyces l...
P37468       144 HLPl-KGIVVMLQKEVAERMAADPSskEYGSLSIAVQFYTEAKTVMIVPKT----------------------------- 193 Bacillus subtil...
1QYR_A       113 YTDaiADMHFMLQKEVVNRLVAGPNskAYGRLSVMAQYYCNVIPVLEVPPS----------------------------- 163 Escherichia coli
P44749       134 YHDviQDMHFMLQKEVVKRLCAAPNskAYGRLTIMAQYFCQVMPVLEVPPS----------------------------- 184 Haemophilus inf...
6NVM_A       204 LFKPVPKVDS---AIMRLRRRAEPllEGAALERYESMVELCFTGVGGNIQASLLRKYPRRRVEAALDHa-GVGGGAVVAY 279 Saccharopolyspo...
Q9US51       261 ITSEPHKEDL---TLVEMCSKPQD--KQLSIPVFESIVRILLTCKATSLSKSIYYLGPGAETLLPSFTqcGINIDMPVGL 335 Schizosaccharom...
WP_015431539 168 SFLPPPTVKS---ALLNIKRKHLf-fDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISEKf-GLNLNAQIVC 242 eubacteria
Q5HNP6       162 YFHPKPSVDS---VLIVLERHQPl-iSKKDYKKYRSFVYKWVNREYRVLFTK------NQFRQALKH-----ANVTNINK 226 Staphylococcus ...
EQC76595     161 CFHPKPKVNS---VLIKLTRHTTDv-PDKYWKLYTYFVSKWVNREYRQLFTK------NQFHQAM-KHa-KVNNLSTVTY 228
6RBD_y       195 NFRPPPQVES---SVVRLEIKNPR--PQVDYNEWDGLLRIVFVRKNRTISAGFKSTTVMDILEKNYKt--FLAMNNEMVD 267 Saccharomyces c...
6YMV_B       247 I-WPT---KGkpiALVEMDPIDFDf----DVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQ-QYFNS---RITDKDLLKK 314 Saccharomyces c...
P87250       236 K-SPD---DL---SLVEINPRDHSi----DLDHWDFVTQKLMILKSKPVEEMIE-ILGHGARDWFISR----LDPVLLKK 299 Kluyveromyces l...
P37468       194 VFVPQPNVDS---AVIRLILRDGPavDVENESFFFQLIKASFAQRRKTLLNNLVNNLPEGKAQKSTIE--QVLEETNIDG 268 Bacillus subtil...
1QYR_A       164 AFTPPPKVDS---AVVRLVPHATMphPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGM-----GIDPAMRAEN 235 Escherichia coli
P44749       185 AFKPAPKVDS---AVVRLIPHKELphPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFSPENLTAL-----GIDLNARAEN 256 Haemophilus inf...
6NVM_A       280 VRPEQWLRLFERLDQ 294 Saccharopolyspora erythraea
Q9US51       336 LSAADFLTISKIIQK 350 Schizosaccharomyces pombe 972h-
WP_015431539 243 LSPSQWVNCFLEMle 257 eubacteria
Q5HNP6       227 LSKEQFLSIFNSYkl 241 Staphylococcus epidermidis RP62A
EQC76595     229 EQVLSIFNSYLLFNg 243
6RBD_y       268 DTKGSMHDVVKEKID 282 Saccharomyces cerevisiae S288C
6YMV_B       315 CPIDLTNDEFIYLTK 329 Saccharomyces cerevisiae S288C
P87250       300 KPYELTYLEIDEIAK 314 Kluyveromyces lactis NRRL Y-1140
P37468       269 KRRGESLSIEEFAAL 283 Bacillus subtilis subsp. subtilis str. 168
1QYR_A       236 ISVAQYCQMANYLAE 250 Escherichia coli
P44749       257 LAIADYARLANWLAD 271 Haemophilus influenzae Rd KW20
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