4X30,2CEO


Conserved Protein Domain Family
serpinA7_TBG

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cd19555: serpinA7_TBG 
Click on image for an interactive view with Cn3D
serpin family A member 7, thyroxine-binding globulin
Thyroxine-binding globulin (TBG, also called T4-binding globulin) is a globulin that binds thyroid hormones in circulation. It is one of three transport proteins (along with transthyretin and serum albumin) responsible for carrying the thyroid hormones thyroxine (T4) and triiodothyronine (T3) in the bloodstream. TBG is synthesized primarily in the liver and is a serpin with no inhibitory function like many other members of this class of proteins. There are two forms of inherited thyroxine-binding globulin deficiency: the complete form (TBG-CD), which results in a total loss of thyroxine-binding globulin, and the partial form (TBG-PD), which reduces the amount of this protein or alters its structure. Neither of these conditions causes any problems with thyroid function, but it can be mistaken for more serious thyroid disorders, such as hypothyroidism. This family belongs to the clade A of the serpin superfamily, which includes the classical serine proteinase inhibitors, alpha-1-antitrypsin and alpha-1-antichymotrypsin, protein C inhibitor, kallistatin, and non-inhibitory serpins, like corticosteroid and thyroxin binding globulins. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.
Statistics
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PSSM-Id: 381023
Aligned: 9 rows
Threshold Bit Score: 784.573
Created: 18-Apr-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
reactive centerthyroxine
Conserved site includes 30 residues -Click on image for an interactive view with Cn3D
Feature 1:reactive center loop (RCL)
Evidence:
  • Comment:depending on the conformational state, the RC loop is surface accessible in the active form or buried and inserted as the central beta strand in the inactive form.
  • Structure:2CEO_A: Human thyroxine-binding globulin RCL in open flexible conformation
  • Comment:thyroxine-binding globulin differs from other serpins in having the upper half of its main beta-sheet fully opened, so its RCL can readily move in and out of the sheet to give an equilibrated binding and release of thyroxine

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
4X30_A     17 ATLYKMSSINADFAFNLYRRFTVETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMVEIQHGFQHLI 96  human
2CEO_A      1 GSLYKMSSINADFAFNLYRRFTVETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMVEIQHGFQHLI 80  human
P05543     37 ATLYKMSSINADFAFNLYRRFTVETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMVEIQHGFQHLI 116 Homo sapiens
P50450     36 ATLYKMSSINADFAFNLYRKVTVETPDQNIFFSPVSISAGLAMLSLGACSSTQTQILESLGFNLTDTPMAEIQQGFQHLI 115 sheep
Q9TT36     35 ATLYKMSSINADFAFNLYRRFTVEIPDQNIFFSPVSIPAGLAMLSLGACSSTQTQILEGLGFNLTDTPVAEIQQGFQHLI 114 cattle
P61640     37 ATLYKMSSINADFAFNLYRRFTVETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMVEIQHGFQHLI 116 chimpanzee
P61939     40 ATLYKMPSINADFAFSLYRRLSVENPDLNIFFSPVSISVALAMLSFGSGSSTQTQILEVLGFNLTDTPVTELQQGFQHLI 119 house mouse
P35577     40 ATLYKMPSINADFAFRLYRKLSVENPDLNIFFSPVSISAALAMLSFGSGSSTQTQILEVLGFNLTDTPVKELQQGFQHLI 119 Norway rat
Q9TT35     36 ATLHKMSSINADFAFNLYRRFAVETPDQNIFFSPVSISAALAMLSFGACSSTQTQILESLGYNLTEMPMAEIQQGFQHLI 115 pig
Feature 1                                                                                     
4X30_A     97 CSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSHVEMQTKGKVVGLIQDLKPNT 176 human
2CEO_A     81 CSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSHVEMQTKGKVVGLIQDLKPNT 160 human
P05543    117 CSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSHVEMQTKGKVVGLIQDLKPNT 196 Homo sapiens
P50450    116 CSLNFPKKELELQMGNALFIGKQLKPLEKFLDDVKNLYETEVFSTDFSNVSAAQQEINSHVERQTKGKIVGLIQDLKPNT 195 sheep
Q9TT36    115 CSLNFPKKELELQMGNALFIGKQLKPLEKFLDDVKNLYETEVFSTDFSNVSAAQQEINSHVEKQTKGKIVGLIQDLKPNT 194 cattle
P61640    117 CSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSHVEMQTKGKVVGLIQDLKPNT 196 chimpanzee
P61939    120 CSLNFPKNELELQMGNAVFIGQQLKPLAKFLDDVKTLYETEVFSTDFSNVSAAQHKINSYVEKQTKGKIVGLIQGLKLNI 199 house mouse
P35577    120 CSLNFPNNELELQMGNAVFIGQQLKPLAKFLDDVKTLYETEVFSTDFSNVSAAQHEINSYVEKQTKGKIVGLIQDLKLNI 199 Norway rat
Q9TT35    116 CSLNFPKKELELQMGNALFIEKQLKPLAKFLDDVKNLYETEVFSTDFSNVSAAQQELNSHVERQTKGKIVGLIPDLKPNT 195 pig
Feature 1                                                                                     
4X30_A    177 IMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMHQMEQYYHLVDMELNCTVLQMDYSKNALALFVLPKEGQ 256 human
2CEO_A    161 IMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMHQMEQYYHLVDMELNCTVLQMDYSKNALALFVLPKEGQ 240 human
P05543    197 IMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMHQMEQYYHLVDMELNCTVLQMDYSKNALALFVLPKEGQ 276 Homo sapiens
P50450    196 ITVLVNYLCFKAQWANPFDPSKTEEGSSFLVDKTTTVQVPMMHQVDQYYHLVDTELNCTVLQMDYSKNALALFVLPKEGQ 275 sheep
Q9TT36    195 ITVLVNYLCFKAQWANPFDPSKTEEGSSFLVDKTTTVQVPMMHQMEQYYHLVDTELNCTVLQMDYSKNALALFVLPKEGQ 274 cattle
P61640    197 IMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMHQMEQYYHLVDMELNCTVLQMDYSKNALALFVLPKEGQ 276 chimpanzee
P61939    200 IMILVNYIHFRAQWANPFRVSKTEESSNFSVDKSTTVQVPMMHQLEQYYHYVDMELNCTVLQMDYSENALALFVLPKEGH 279 house mouse
P35577    200 IMILVNYIHFKAQWANPFRVSKTEESSNFSVDKSTTVQVPMMHQLEQYYHYVDVELNCTVLQMDYSANALALFVLPKEGH 279 Norway rat
Q9TT35    196 IMVLVNYICFKAQWANPFDPSKTEEGSSFLVDKTTTVQVPMMHQMEQYYHLVDTELNCTVLQMDYSKNALALFVLPNEGQ 275 pig
Feature 1                                                                                     
4X30_A    257 MESVEAAMSSKTLKKWNRLLQKGWVDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSGLteDNGLKLSNAAHKAVLH 336 human
2CEO_A    241 MESVEAAMSSKTLKKWNRLLQKGWVDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSGLteDNGLKLSNAAHKAVLH 320 human
P05543    277 MESVEAAMSSKTLKKWNRLLQKGWVDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSGLteDNGLKLSNAAHKAVLH 356 Homo sapiens
P50450    276 MEGVEGAMSSKILKKWNRLLQKGWVNLFVPKFSISATYDLGGILLKMGIQDAFADNADFSGLtkDNGLKVSNVAHKAMFY 355 sheep
Q9TT36    275 MEWVEGAMSSKTLKKWNRLLRKGWVDLFVPKFSISATYDLGDILLKMGIQDAFADNADFSGLtkDNGLKVSNVAHKAMFY 354 cattle
P61640    277 MESVEAAMSSKTLKKWNRLLQKGWVDLFVPKFSISATYDLGATLLKMGIQHAYSENADFSGLteDNGLKLSNAAHKAVLH 356 chimpanzee
P61939    280 MEWVEAAMSSKTLKKWNYLLQKGWVELFVPKFSISATYDLGSTLQKMGMRDAFAESADFPGIteDSGLKLSYAFHKAVLH 359 house mouse
P35577    280 MEWVEAAMSSKTLKKWNHLLQKGWVELFVPKFSISATYDLGSTLQKMGMRDAFAESADFPGItkDNGLKLSYAFHKAVLH 359 Norway rat
Q9TT35    276 MEWVEGAMSSKILKKWNRLLQKGWIDLFVPKFSMSATYDLGDILLKMGIQDAFADNADFSGLtkDNGLKLSNAAHKAVLN 355 pig
Feature 1       ###################  ###########                         
4X30_A    337 IGEKGTEAAAVPEVELSDQPEntFLHPIIQIDRSFMLLILERSTRSILFLGKVVNPTEA 395 human
2CEO_A    321 IGEKGTEAAAVPEVELSDQPEntFLHPIIQIDRSFMLLILERSTRSILFLGKVVNPTEA 379 human
P05543    357 IGEKGTEAAAVPEVELSDQPEntFLHPIIQIDRSFMLLILERSTRSILFLGKVVNPTEA 415 Homo sapiens
P50450    356 IGEKGTEAIPEVRFLNQPETT--LLHPIIQFDRSFLLLILEKNTRSILFLGKVVDPTEV 412 sheep
Q9TT36    355 IGEKGTEAVPEVRFLNQPETT--LLHPIIQFDRSFLLLILEKNTRSILFLGKVVDPTEA 411 cattle
P61640    357 IGEKGTEAAAVPEVELSDQPEntFLHPIIQIDRSFMLLILERSTRSILFLGKVVDPTEA 415 chimpanzee
P61939    360 IGEEGTKEGASPEVGSLDQQEvpPLHPVIRLDRAFLLMILEKRTRSVLFLGKLVNPTKQ 418 house mouse
P35577    360 IGEEGTKEGASPEAGSLDQPEvaPLHAVIRLDRTFLLMILEKRTRSVLFLGKVVDPTKE 418 Norway rat
Q9TT35    356 IGEKGTEAIPEVTFLNQPKIT--LLHPIIQFDRSFLLLILEKSTRSILFLGKVVDPTEA 412 pig

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