Conserved Protein Domain Family
S1_dom_Ygs

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NF040578: S1_dom_Ygs 
S1 domain-containing post-transcriptional regulator Ygs
Ygs, as first described in Staphylococcus epidermidis, is a full-length homolog of GSP13 (YugI) from Bacillus subtilis. Each has a single copy of the S1 domain, an RNA-binding domain repeated several times in ribosomal small subunit protein S1, and each has been shown to be induced by stress and improve survival. Ygs was shown in Staphylococcus epidermidis to affect polysaccharide intercellular adhesin biosynthesis, and through it, biofilm formation. More recently, the full-length homolog CvfD was shown to be a post-transcriptional regulator, suggesting all members of this family are.
Statistics
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PSSM-Id: 468552
Aligned: 9 rows
Threshold Bit Score: 199.251
Created: 24-Apr-2023
Updated: 4-May-2023
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_001831918   1 MNHHYKVGQHIKVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSIDDEGKLNLSLKDNDY 80  Staphylococcus
WP_002509346   1 MNNHYKVGQHLKVRVTGIQPYGAFVETPDNTEGLIHISEIMDDYVHNLKKFLSEGQVVRAKVISIDKEGKLNLSLKDNDY 80  Staphylococcus
WP_002472261   1 MNAYYKAGQHIKVRVTGIQPYGAFVETPDNTEGLIHISEVMDDYVHNLKKFLSPGQVVRAKIISIDEEGKLNLSLKDNKY 80  Staphylococcus
WP_015899820   1 MNNHYQIGQHVKVKVAGIQPYGAFVETPDNTEGLIHISEIMNDYVHNLSRFLSEGQIVRAKILSIDEEGKLNLSLKDNDY 80  Staphylococcus ...
WP_009383468   1 MNNQYKVGQHVKVRVTGVQPYGAFVETPDNTEGLIHISEVMDDYVHNIKKLLSEGQIVKAKILSIDHEGKLNLSLKDNDY 80  Staphylococcus ...
WP_016424619   2 LKRQYRVGQHVKVRVTGIQPYGAFVETPDSTEGLIHISEIMDDYVHNLKKLLSPGQIVKAKIISIDSNGKLNLSLKDNDY 81  Staphylococcaceae
WP_017000055   1 MRKHYKVGQFVKVKVTGIQPYGAFVETPDHVEGLIHISEVMNDYVHNLNQFLSVGQIVKAKVIKVENDGKLSLSLKENEY 80  Mammaliicoccus ...
WP_012656489   1 MKKTYKKGQFIKVKVTGIQPYGAFVETEDHTEGLIHISEVMNDYVHNLNLLLSVGQIVKAKVLNVSEDGKLNLSLKENDY 80  Macrococcus cas...
WP_020007805   1 MAKKYRKGQFIKVKVTGIQPYGAFVKTPDNQEGLIHISEVMNDYVHDINQFLSKGQIVKVKILSVGKEGKLDLTLKENEY 80  Salinicoccus albus
WP_001831918  81 FKNYERKKEKQSVLDEIRETEKYGFQTLKERLPVWIKQSKRA 122 Staphylococcus
WP_002509346  81 FKNYERKKEKQSVLDEIKETEKYGFQTIKERMPGWIKQSKDT 122 Staphylococcus
WP_002472261  81 FKNYERKKEKRSVLDDIKETEKYGFQTIKERLPVWIKQSKKA 122 Staphylococcus
WP_015899820  81 FKNYERKKEKKSVLDEIKETEKYGFQTLEERLPVWIAQSKKM 122 Staphylococcus carnosus
WP_009383468  81 FKNYERKKSKRSVLEEIEETEVYGFQTLKERLPKWVKQSKQQ 122 Staphylococcus massiliensis
WP_016424619  82 FKNYERRKGKYSVLDEIQETEKYGFQTLEERLPYWVKQSKKR 123 Staphylococcaceae
WP_017000055  81 FKRQERKKEKRSVLDEIRETEKYGFLPLKERLPKWINQSNKH 122 Mammaliicoccus lentus
WP_012656489  81 FKKQERKKTKRSVLEQLNEPESIGFKTLQERLPGWIERGLKL 122 Macrococcus caseolyticus
WP_020007805  81 FKREERKRDRRSVLDQIRETEKYGFESIRQKMPEWISQAKKY 122 Salinicoccus albus
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