1GS5,2BUF,2BTY,2AP9


Conserved Protein Domain Family
AAK_NAGK-like

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cd04238: AAK_NAGK-like 
Click on image for an interactive view with Cn3D
AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Statistics
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PSSM-Id: 239771
Aligned: 84 rows
Threshold Bit Score: 157.286
Created: 17-Nov-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
N-acetyl-L-gl..nucleotide
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:N-acetyl-L-glutamate binding site [chemical binding site]
Evidence:
  • Structure:1GS5; Escherichia coli NAGK complexed with the substrate NAG and with the inert nucleotide substrate analog AMPPNP, showing contacts with NAG.
  • Structure:2BUF; Pseudomonas aeruginosa NAGK complexed with NAG and ADP, showing contacts with NAG.
  • Comment:defined by 3.5 Angstrom contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              ##                    #                  
1GS5_A        5 LIIKLGGVLLdseeaLERLFSALVnyreshQRPLVIVHGGGCVVDelMKGLNLPVKKknGLRVTPADQIDIITGALaGTA 84  Escherichia coli
ZP_00309406   5 YIIKVGGNIIdnpeaLTSFLKDFAs----lKENKILVHGGGKVATeiSKGLGIEAQMvdGRRITDAETLKIVTMVYgGLI 80  Cytophaga hutchi...
BAB06617      5 VVIKCGGSVLds--lSDSFFTSVRrlq-aeGAKPIIVHGGGPAINgmLAKLEVETTFvdGLRKTTDSVLSVAEMVLcGQT 81  Bacillus halodur...
YP_176052     4 VVIKIGGSTLea--lEEGFYEGVVkra-slGDKIMIVHGGGPAINnlLQAMAVESQFvnGLRKTTAEVLTAAETALsGQI 80  Bacillus clausii...
NP_389003     5 IVFKCGGSVIre--lSEEFYQNLKelr-asGWKLAIVHGGGPEITnmLKRLNIKTEFsgGQRKTTKPVLEVAEMVLsGSV 81  Bacillus subtili...
AAS43102      5 IVVKCGGSMLdq--lHDVFFDCIKkl--qqKYKVVIVHGGGPEIDakLKDCNINVEKkdGLRVTPKEVMDIVQMVLcGST 80  Bacillus cereus ...
584767        5 VVIKCGGSVLde--lSPAFFASVNamr-kqGMEVVIVHGGGPEIGqmLKTLRVPSEFvnGLRKTTKDVLAVVEMVLsGKV 81  Geobacillus stea...
ZP_01170957   4 IVIKCGGSILek--lTSDFFDSLKkln-iqGYQMIFVHGGGPEINdmLRLKGIESQFvqGLRKTDERTLETAEMVLaGQS 80  Bacillus sp. NRR...
NP_691998     4 VVFKVGGSVLnq--lSPKFYQVLLqlketgTCNPIIVHGGGPEINeaLSKMNIKTEFvdGLRVTSEEVLSIAEMVMsGTI 81  Oceanobacillus i...
NP_370706     4 IVIKIGGSTLsd--mHPSIINNIKhlr-snNIYPIIVHGGGPFINeaLSNQQIEPHFvnGLRVTDKATMTITKHTLiADV 80  Staphylococcus a...
Feature 1                                                                                     ##
1GS5_A       85 NKTLLAWAkkhqIAAVGLFLGDGDSVkvtq----ldeeLGHVGLAQPGSPKLINSLLEnGYLPVVSSIGvt-dEGQLMNV 159 Escherichia coli
ZP_00309406  81 NKNIVAKLqsneCNAIGLTGADANIMlsskrplkngidYGFVGDVKKVHPQPLIHLLSqGITPVVAPLThd-gNGTMLNT 159 Cytophaga hutchi...
BAB06617     82 NKKVVRKLqkagVKSIGLSGSDGELVrvkai---deaiLGYVGEPVHVNGELLHMLVAdGFVPVLAPIGvn-dEFEPYNV 157 Bacillus halodur...
YP_176052    81 NKQLVRSLyqagGKAIGLSGSDGHLLktipi---dtdkLGFVGAVESVNVDVLFNVAKaGYIPVIAPIGmd-aNYQPYNI 156 Bacillus clausii...
NP_389003    82 NKFFVAELakhgLRAAGISGKDGGLLeadyl---dpetYGEVGEIKKVDASMVNALMEnGIIPVIAPLSmt-sDCKTLNV 157 Bacillus subtili...
AAS43102     81 NKKLVMNLqkhnLRAVGCSGCDGKLLqvqp----vseeIGYVGEVRYVETALLKGLINmNYIPVIAPVGi--nDNEIYNI 154 Bacillus cereus ...
584767       82 NKQLASMLrqhgLPAVGVSGVDGGLLeaepi---dlakLGYVGRVKTVRSQLLRTLLAaGYIPVISPLGid-qNGQTYNI 157 Geobacillus stea...
ZP_01170957  81 NRKLADLLqqngFNALGMNGPDGIFQaeyv----dkenLGFVGRIDHVSAEVLQLLLQnGYLPVLTPLAkt-kEGQKLNV 155 Bacillus sp. NRR...
NP_691998    82 NKRIVSSIqsigGNALGLSGVDGKLLrakqm---hdgkLGLVGEVVEVNTEWLSIIMNsGGIPVISPIAig-dADKRYNV 157 Oceanobacillus i...
NP_370706    81 NTALVAQFnqhqCSAIGLCGLDAQLFeits----fdqqYGYVGVPTALNKDALQYLCT-KFVPIINSIGfnnhDGEFYNI 155 Staphylococcus a...
Feature 1        #                                                                              
1GS5_A      160 NADQAATALAATLGA----DLILLSDVSGILDg---kGQRIAEMtaakAEQLieqGIITDGMIVKVNAALDAARtLGRPV 232 Escherichia coli
ZP_00309406 160 NADTVASELAVALCGafavNLVYCFELKGVLRdfedkDSVISTInpdtYEELkstGVINKGMIPKLDNSFNAINaGVSSV 239 Cytophaga hutchi...
BAB06617    158 NADTVAGAVATALQAk---ELIFVTDVAGILKd----DELVPALtpeeVESLieeGTIYGGMIPKVRSAIHSLTgTLEAV 230 Bacillus halodur...
YP_176052   157 NADTAAAAVAKASKAe---ELVFVTDVDGVQKd----GKVIKEMdevlAKHYieeGVIYGGMVPKVNACLDSLSgALTKA 229 Bacillus clausii...
NP_389003   158 NADLAASAVAGALEAd---KLMFVTDVDGIMKe----KQRLDVLtpkeIQMLikqEVITGGMIPKVNSALSALSdQVSEV 230 Bacillus subtili...
AAS43102    155 NADTAAAGIAAALSAk---ELIFITDVDGVLHe----GKLLKKTdefeIVNLiekGVITGGMIPKVQAALASLKmGVQKV 227 Bacillus cereus ...
584767      158 NADTAAGAVAAAIGAs---QLAFVTNVPGILRd----GALVAEAtaemIERLiedGVITGGMIPKVQAALSALSdALPEV 230 Geobacillus stea...
ZP_01170957 156 NADYAAAAVALALNAe---QCLFVTDVEGIKAe----GALIDRLddekASAYiqdGTISGGMIPKVESALAAIRqGVKSV 228 Bacillus sp. NRR...
NP_691998   158 NGDMAAGAVAEAFQS----KLILVSNIPGVIEsvngeEIIHHHLtkqqVESKidsGVIYGGMIPKVRSALASLKsGVAES 233 Oceanobacillus i...
NP_370706   156 NADTLAYFIASSLKA----PIYVLSNIAGVLIn----DVVIPQLplvdIHQYiehGDIYGGMIPKVLDAKNAIEnGCPKV 227 Staphylococcus a...
Feature 1                                
1GS5_A      233 DIAswrhaeqLPALfng-mpmGTRI 256 Escherichia coli
ZP_00309406 240 IICqa---esLVELinenktvGTKL 261 Cytophaga hutchinsonii
BAB06617    231 SIVngn--dvFFAEsgk--liGTTI 251 Bacillus halodurans C-125
YP_176052   230 RIVng---kkAYHPs-----aGTAI 246 Bacillus clausii KSM-K16
NP_389003   231 MIVngk--gsFFAEqt---fqGTKI 250 Bacillus subtilis subsp. subtilis str. 168
AAS43102    228 SIVngt--kdFTEVtge--ciGTTV 248 Bacillus cereus ATCC 10987
584767      231 MIVsgk--ttFYQNgt---whGTTI 250 Geobacillus stearothermophilus
ZP_01170957 229 RIIsgv--kpFYTGga---wgGTQI 248 Bacillus sp. NRRL B-14911
NP_691998   234 VILnglnpieIKNYleg-ktvGTVL 257 Oceanobacillus iheyensis HTE831
NP_370706   228 IIAsgnkpniIESIynn-dfvGTTI 251 Staphylococcus aureus subsp. aureus Mu50

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